Gene detail

Detailed information of alvinactis_v1_g9497 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:25570246...25581708
NR annotation: KXJ15083.1, THO complex subunit 6-like [Exaiptasia diaphana]
Species abbreviation AIDSS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XJS5	THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1
Q6AY87	THO complex subunit 6 homolog OS=Rattus norvegicus OX=10116 GN=Thoc6 PE=2 SV=1
Q5U4D9	THO complex subunit 6 homolog OS=Mus musculus OX=10090 GN=Thoc6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005827 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12928 all species →	tRNA_int_end_N2	tRNA-splicing endonuclease subunit sen54 N-term	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR024336 all species →	Domain	tRNA-splicing endonuclease, subunit Sen54, N-terminal	Interproscan
IPR042626 all species →	Family	THO complex subunit 6	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036740 all species →	Homologous_superfamily	tRNA intron endonuclease, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44411 all species →	THO COMPLEX SUBUNIT 6 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000346 all species →	Cellular Component	transcription export complex	Interproscan
GO:0000347 all species →	Cellular Component	THO complex	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0000213 all species →	Molecular Function	tRNA-intron endonuclease activity	Interproscan
GO:0006388 all species →	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13175	THOC6; THO complex subunit 6	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.