Gene detail

Detailed information of alvinactis_v1_g9605 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:26924482...26953747
NR annotation: XP_020912382.1, mitochondrial Rho GTPase 1-A isoform X2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g9605

ATGGAGCTTGAAATACAAGTTTCAGTAAATTTCCTGATGAATTACCTTTACAATAAACTACCAAGACGAAGAGTAGATCTCTTCGGAGAAGAACTGGCCAAGAAACTGACCCAAAAATTTGAAGGTCATTGGTATCCAGACAAACCCCAGAAAGGAAGTGCCTATCGTTGTATTCTCATATCTGAAAAGCTAGACCCCGTCCTTGTTGTTGCTGCTAGAGAAAGCGGACTTAAAATCGAGGACGTAAAAGCGAATTTGCCCGAAAAGTTGTGTCTATGGATCGACCCTCACGAAGTCTCTTACAGAATCGGCGAACAAGGCTCCGTTAGTTCTATTTACAAGAAAGAGAACATTACATTTGCTGATGAAATATCTGATGCCGAGACGGCACGTTGGGTCCCTTCAAGAGCTGAGGAAATAACCATTCCTGCAGATGTTACCCCAGAAAAGATACCAACCCATATAGTAGATTATTCAGCTGAAGAGCAGGCAGAAGATGTACTTGCAGAGGAAATTCAAAAAGCTAATGTGGTCTGCATCGTCTATGACATCACAGATGAGGAAACAATTGAGAGGATAACAAGTGTATGGCTGCCTCTTATTAGAAATATCACTGAGGATGAAGACAAAGTAAAACCAGTTGTTATTGTTGGCAACAAGTCTGATCTGTCTGACACCAGTACAATGGATGTTGTTCTCCCTATCATGAATGATTATACTGAAGTGGAGACATGTATAGAGTGTTCCGCAAAAAGTTTAAAGAATATATCAGAAATGTTTTATTATGCCCAAAAGGCTGTACTGCATCCAACAGCACCACTATACTTACCAGAAGAAAAACAGTTAAAACCACTTTGTGAGAAAGCACTTACAAGAATATTTACAATATCAGATACTGACGGCGATGGGATACTTAATGACACAGAATTAAATAATTTTCAGAGACATTGCTTTAACTCACCTCTACAAGGCCAAGGATTACAAGATGTCAAAAATGTAGTTAGAAAAAATATTGAAAGTGGACTCAGAGATGGTGGACTTACTCTTGGGGGTTTTCTATTTCTTCACACATTATTTATACAAAGAGGTCGACATGAGACAACATGGACTGTACTTAGAAAGTTTGGTTATGGTGAAGACTTACAGCTTAGAGATGACTACTTTTGTCCTCCTGGGATTGAGGTTGGTGTTGACAACACAGTAGAGCTTTCTGATGCTGGATATGAGTTCTTTATTGACCTGTTTCACAAGTATGACAAGGATCGAGATGAAGCTCTGAATCCAGTGGAACTCAAGAACCTGTTTTCACTGTGTCCATCCATGCCTTGGGGTGACGAAGTTATCAGTTCTGCAGAGACCAATGAACAAGGATGGGTAACCTTACAAGGATTTCTTGCACAATGGTTACTGACGACATTCTTGGACTACACAAGGACATTTGCATATCTGGCATATTTTGGTTATACACACGGAGAGACAGAGACACATTTGTCTACGGCTATCACAGTCACACGCAGCAAGTCGATTGATATTCAGAAGAAATCTACTTCACGTTCAGTCTTCCAGTGTTATGTTTTTGGTCCACCAGGAGTAGGAAAGACTGCATTCCTTCAATCATTTCTCAATAAAGCAgtaaagTCATTAGGATCAGACAAGATGGTCTCTCATTATGTCATTAACCTGACAGAAGTACACAGACAGGAGAAATATCTCGTGTTGCGTGAGATTGACTGGGAGAGCTCTGGTTTACTTCTTCATGATAGAAGATGTGATGTAGCATGCTTTCTGTATGACTCTACTGATGCAGCATCATTTGCACAAGTTGTACAACTACAAGAGAAACTCCCCAAGACAGTCCCTTGTTTGTTTATTGCTACCAGAAGTAAAATCTCAGTAGTTAGACAGGAGTATGAACTACAACCAGCTATGTATGCCTCCCTTAACAAGTTACCTGCACCTGTGCCTTTTAGTGAAAAACCAGAAGAAAATCAAGATATCTACATCAAATTATCACAAATGGCAGTTTATCCTCATTTATGTGGTCCAAATACAGATAGCATGGGGTCATTTTGGTTACTTGCTGGAGTTGGTGCCACTGCTGTTGCTTTATTTGCCTTCATTGCATACCGATACTTACGTAAAAGTGGTGGAACAACATGA

Transcript

alvinactis_v1_g9605

Protein

Uniprot

Uniprot term	Description
Q6NVC5	Mitochondrial Rho GTPase 1-A OS=Danio rerio OX=7955 GN=rhot1a PE=2 SV=1
Q8BG51	Mitochondrial Rho GTPase 1 OS=Mus musculus OX=10090 GN=Rhot1 PE=1 SV=1
A1L1L6	Mitochondrial Rho GTPase OS=Rattus norvegicus OX=10116 GN=Rhot1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07742	BTG	BTG family	Family	Interproscan
PF00071	Ras	Ras family	Domain	Interproscan
PF08356	EF_assoc_2	EF hand associated	Family	Interproscan
PF08355	EF_assoc_1	EF hand associated	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036054	Homologous_superfamily	BTG-like domain superfamily	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002087	Domain	Anti-proliferative protein	Interproscan
IPR015676	Family	Tob1/2	Interproscan
IPR020860	Domain	MIRO domain	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013567	Domain	EF hand associated, type-2	Interproscan
IPR013566	Domain	Mitochondrial Rho GTPase 1/3, EF hand associated, type-1	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17537	TRANSDUCER OF ERBB2 TOB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07870	RHOT1, ARHT1; mitochondrial Rho GTPase 1	EC:3.6.5.-	GTP-binding proteins	ko04031	deepkoala