Gene detail

Detailed information of alvinactis_v1_g9611 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:27017420...27038458
NR annotation: XP_031574180.1, RNA polymerase I-specific transcription initiation factor RRN3-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g9611

ATGGCAATGATGTTGAAATATCTACATTGGCTTATCGCTCTGACATGCGCAGTCATGGCACATGGACTAGTGCCAGGTCCCTCGAGAGGCGAATGCAAAAGAAGTGCAATATTCAAGAAAGGCGCTAAAGATCACAAGTTGACGGGTCACGTGATTGCAACACATGACGTCACTAGTTCCCAGGACTGTGCAGACGAGTGTTTACGAACCAGCGGTTGTAAATCGTACAATTACCAGGAAATAGGATCTCCTCTTCACGTCTGTCAATTAAGTAGTCACTCCAAGACCTCGGCGCCGTCATCTGATTACGTCATACAGGCGGGATACTCGTACTACGACGCTGAAGAATACGTTTTGCCTGTCTGTGCGTCTTCTCCGTGTCAAAATAATGGAACTTGCTGCATTGATGGATGTACTGACGATTATGAATGTGTCTGCACCGAGAATTACTCTGGAGCAAATTGTGAGACATGGACAGGCTTTAACGGCTCGTCCACTGGCTTTCCTGGGAGATCTTGCTTCTACATTAAATTGTATGGAAAAGATAATGGCGACGGCAACTACTGGATCGACCCGACTCGGTCTGGAAATCCATTCCTTGTGCAATgtgacatgacaacagagggagGTGGATGGACGGTGATTAAAGCTGTGACGTTGAAATCTTCTTCGATTCCATCAACGGACGAAACCTACTTTAATGTCTACCGTAATCTAGGAACCCTCAAAGATCATGAGTACGTCACAGCTACAGGCCTGGTGGCAATGCAGACAGACATGGGTTTCAATCAGATACGCTATTTGTGTCGCAAAAGTTCCGTTGGGCGCACAATTCACATCATGACAGCCGTAAATACCCGTGGTTCTGCAGCCGTAAGGTATTTACTTCATGGCCCTTCGCCGTATGCAATTGCTTGTGACTCGTACATTCGTCTATCTGATGACAAATCTCTGCTGTCTGTGAACTGTGCCAAGTGGGGGCGATTCTCCTCGGACGGTGATGAAAAGCGTGTTGATGATAGCTGTACTGTGAACTCTACTGACAGTACAGTCTCTAGTGCAATACTTGTAAGCTCTTTGATTATATCTCAAGCCTTATTGAATTTTGAAAAGGGCCAGAGAAATGAATATGATGCATTGGTTCAAAAGCTTGGAGACCATTCTCTAAAGCCTCTCCATCTACGGCGATATCTTAAAGCATTGAAAAGATGTGTAACGTTACTGAACAAAAAGTGTGACATTCTTGTGGGAACAGTGTTGAAAGTAAACTGGGCGAATTCTGACGAAGAGACTGCTGAGGAATTCATTGAGTTCCTGATGACTCTGGTGTCAGCACAGACCTTCTATTTGAGAGCCTGTCTTAGAATGCTTACCAAACTCTTCCTACCAAATATTCCAAAAGGTATTGAACCACAAGATGTTGATATCACAGAACAAGAACGTGTTTTCACTCGTGCTCATAGTGGTTTACAAGCTATTCTGGAGTTGGTACCAACAACACCCAAGTTTTTACTTCCAGTTTTGGCCGACTTTTTCCCTTACATCAAAAAGCATAAGATATACCAAACAAGCTATCTCAAAAATCTCCTTCACATTACACAATACCTGCCATTACTTAGAGAAGAAATACTGGAATGTGTTATAAACCATATTACTAAAATAGATGTTGAGGTTCCACGACATGAGCTTGAAGAACCTGAAGAAGAAACTCAGTTTGAAGTAGATTTGGAATCCAAGAAAGATGACGCTGATGGTCAAGTAGAAAATCAGACAAAGACAACCATAGGCAACGAGATGGCAGAGAACTTAGATGAATTAATGGAGATGTTATTTATGTATATTATAGATCTATGCCATGTGGATGGCAATAATTATCTTGTTGACTCAAGTACAGAATTATTTCATCAACTTATGATGGTATATGAAAAGATTATCCTGCCTACACATGCCAGCTGCCACATACACTTTGTGGTTTTCTACATCTGTAGTTTAGACCAGGCATTTGCAAACTCTTTCTTGGATTTATGTTGGAAAAAGATGGAGAATCCCAACGTCCCATCAATACTACGCCAAGCTAGTGCTGCATACATGGCAAGTTTTGTAGCAAGAGCAAAATTCCTCCCAATAAGAATTATTGATATCTGTGATGTGATTTTATCTTCAACAGTACTGTCAAAGTTTGTGTGGAGCTGCTTATACACTGGATACACTGCTACATTGATGTCCATGACGCGACATGTGCTGGACCAGATCTTGACAAGGCATGGCCCATTTTACTCTGTGTGCCAGGCATTGTTTTATATGTTTGTGTTCAGACATCGTTCTCTACTTGAATTAGAAGATGGTCACAAGTTTATTAGAAGACTCAGCTTTGAGCGAATTATTACGTCCAGATTGAATCCCCTTAAAGTTTGTTTAACGACCATCGTGAACTTGTTCGCACTAGTCACAAGCCGACACCAGATAGTATTATGCTATACAGTCATCGAGAGGAATAAACGGTCCCTACTACCTATTGCCTCCATACAATCCAACAAGGCAGTGTCTCGTCTAACGATCTTCAATCAGCTCGACTCATTCTTCCCATTTGATCCTTATCTTTTACCCAAGTCAGGTAAATTCATCAAACCATTATACCAAGAATGGGGTGGAGTCGAGGAGGATACAGGTGATGTACGCGATGAACTCGATGAAAAGGTTCAAGATTTCGATAGCGAGGATGAAGACGACTACATGGCTGATTACGGTAAAACCCCGGATATCGATGTACCGGGACTTACACCAGATACGTCCATGTGTATCTCACCGGGATTTGTTGTATCACCGATAGACCACGAGGGCAGGTTACATCATGGAGCACACAGAGTGATGACCAAGCGTAGATGA

Transcript

alvinactis_v1_g9611

Protein

Uniprot

Uniprot term	Description
B2RS91	RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus OX=10090 GN=Rrn3 PE=1 SV=1
Q9NYV6	RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens OX=9606 GN=RRN3 PE=1 SV=1
Q5R4N9	RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii OX=9601 GN=RRN3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00024	PAN_1	PAN domain	Domain	Interproscan
PF00147	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF05327	RRN3	RNA polymerase I specific transcription initiation factor RRN3	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR007991	Family	RNA polymerase I specific transcription initiation factor RRN3	Interproscan
IPR003609	Domain	PAN/Apple domain	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12790	TRANSCRIPTION INITIATION FACTOR IA RRN3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001042	Molecular Function	RNA polymerase I core binding	Interproscan
GO:0001181	Molecular Function	RNA polymerase I general transcription initiation factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006361	Biological Process	transcription initiation at RNA polymerase I promoter	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15216	RRN3, TIFIA; RNA polymerase I-specific transcription initiation factor RRN3	-	Transcription machinery	ko03021	deepkoala