Genomic Location: chr_4:27171075...27173391
NR annotation: XP_020902356.1, evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial [Exaiptasia diaphana]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families
| CDS |
| alvinactis_v1_g9623 |
| Transcript |
| alvinactis_v1_g9623 |
| Protein |
| alvinactis_v1_g9623 |
| UniProt accession | Description |
|---|---|
| Q08CK1 | Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial OS=Danio rerio OX=7955 GN=ecsit PE=2 SV=1 |
| Q3SX05 | Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial OS=Bos taurus OX=9913 GN=ECSIT PE=2 SV=1 |
| A2VD95 | Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial OS=Xenopus laevis OX=8355 GN=ecsit PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008272 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF06239 all species → | ECSIT_N | Evolutionarily conserved signalling intermediate in Toll pathway | Repeat | Interproscan |
| PF14784 all species → | ECSIT_C | C-terminal domain of the ECSIT protein | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029342 all species → | Domain | ECSIT, C-terminal domain | Interproscan |
| IPR046448 all species → | Domain | ECSIT, N-terminal | Interproscan |
| IPR010418 all species → | Family | ECSIT | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13113 all species → | ECSIT EVOLUTIONARILY CONSERVED SIGNALING INTERMEDIATE IN TOLL PATHWAYS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0007178 all species → | Biological Process | cell surface receptor protein serine/threonine kinase signaling pathway | Interproscan |
| GO:0045087 all species → | Biological Process | innate immune response | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04405 | ECSIT; evolutionarily conserved signaling intermediate in Toll pathway | - | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
