Genomic Location: chr_4:28052118...28061106
NR annotation: XP_020910969.1, protoheme IX farnesyltransferase, mitochondrial [Exaiptasia diaphana]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families
| CDS |
| alvinactis_v1_g9698 |
| Transcript |
| alvinactis_v1_g9698 |
| Protein |
| alvinactis_v1_g9698 |
| UniProt accession | Description |
|---|---|
| Q8CFY5 | Protoheme IX farnesyltransferase, mitochondrial OS=Mus musculus OX=10090 GN=Cox10 PE=2 SV=1 |
| Q12887 | Protoheme IX farnesyltransferase, mitochondrial OS=Homo sapiens OX=9606 GN=COX10 PE=1 SV=3 |
| Q5R460 | Protoheme IX farnesyltransferase, mitochondrial OS=Pongo abelii OX=9601 GN=COX10 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006995 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01040 all species → | UbiA | UbiA prenyltransferase family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016315 all species → | Family | Protohaem IX farnesyltransferase, mitochondria | Interproscan |
| IPR030470 all species → | Conserved_site | UbiA prenyltransferase conserved site | Interproscan |
| IPR006369 all species → | Family | Protohaem IX farnesyltransferase | Interproscan |
| IPR000537 all species → | Family | UbiA prenyltransferase family | Interproscan |
| IPR044878 all species → | Homologous_superfamily | UbiA prenyltransferase superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43448 all species → | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006783 all species → | Biological Process | heme biosynthetic process | Interproscan |
| GO:0008495 all species → | Molecular Function | protoheme IX farnesyltransferase activity | Interproscan |
| GO:0031966 all species → | Cellular Component | mitochondrial membrane | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016765 all species → | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0006784 all species → | Biological Process | heme A biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02257 | COX10, ctaB, cyoE; heme o synthase | EC:2.5.1.141 | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
