Genomic Location: chr_1:16414415...16415095
NR annotation: XP_020892152.1, uncharacterized protein LOC110231471 [Exaiptasia diaphana]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families
| CDS |
| alvinactis_v1_g972 |
| Transcript |
| alvinactis_v1_g972 |
| Protein |
| alvinactis_v1_g972 |
| UniProt accession | Description |
|---|---|
| Q5L9P9 | Phosphonoacetaldehyde hydrolase OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2) OX=272559 GN=phnX PE=3 SV=1 |
| Q64PZ2 | Phosphonoacetaldehyde hydrolase OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=phnX PE=3 SV=1 |
| B8DKP2 | Phosphonoacetaldehyde hydrolase OS=Nitratidesulfovibrio vulgaris (strain DSM 19637 / Miyazaki F) OX=883 GN=phnX PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010471 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13419 all species → | HAD_2 | Haloacid dehalogenase-like hydrolase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050155 all species → | Family | HAD-like hydrolase superfamily | Interproscan |
| IPR023214 all species → | Homologous_superfamily | HAD superfamily | Interproscan |
| IPR036412 all species → | Homologous_superfamily | HAD-like superfamily | Interproscan |
| IPR023198 all species → | Homologous_superfamily | Phosphoglycolate phosphatase-like, domain 2 | Interproscan |
| IPR041492 all species → | Family | Haloacid dehalogenase-like hydrolase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43434 all species → | PHOSPHOGLYCOLATE PHOSPHATASE | Interproscan |
alvinactis_v1_g972 in Alvinactis idsseensis sp. Nov..alvinactis_v1_g972.Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
