Gene detail

Detailed information of amic_s0001.g83.t3 in Acropora microphthalma

Genomic Location: sc0000001_pilon:1121229...1134590
NR annotation: XP_029197850.2, telomere repeats-binding bouquet formation protein 1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0001.g83.t3

GTCAGAATTGGAGAAGGAAGTGCAAGACGTAAAGCTTTTACAAGAGTCACTTCGTTTCCAGGAAGGTGACTCTTCGCAACAGCAACAAGCCCTTAGAGCTTTGAGCGAAATCCTCTCTCAGAATAGAAGAGCTCAAGACTATTTTTGTTCAACTCATGGATTGGATTATGTAATCAGCCTTTTAAAAAGTGCAAAGAAAAGTGACTTGTCTAAGGCAGCATTGTACACTTTGGCTATGGCCACTGAAGGAAATGACATTTCACAAAGGGTTTTGACAGAGGCCGGTGTATTCCACATGCTGCGATCTCACTTGCAGGCTAAGAACAGCTCAACTACAACCACTGCTGCCTTCCTTCTGTTGACAATATGTGCTGATAATGGTGAAGGACAAAGTCTAGCAAGAGAAACAAAATGTTTACACAGCTTGTGTGCACTGTTTAAGAGCTGTCTTGCAATGCACAAAGAGCCATCATTCATAGCTAATGCAGACGAGTGGTTTAGTAATATGGATGAAAGTAGCATTCAGCTTTGGAAAACTGTGATAGTAGCCTTACAATCCCTGCTTCAAAACCCCCAAAATGCTCAGAATCAAGTAATTTGCTGTAGGCTCCTACCAATGATTGTAAATCTATTGCAGTTGGCGACTAAACAACGGGAGATCATTAGACCAACCACCACACTTCTTCGAGCCATTGTTACCGGAAACAGTGATTGTCAATCAAAAGTGAGACTGTTGGGTGGACTGCGTGCATTAGTCAATGTTCTGAAAGAGTGCATCAACGAGAAACAACCCTGTGACCAAGATTTGCCTTTTATTGAACATGTTGTGAGCACCATAGGATCTGCCACAGCTGGTCACGGAATGTGTCAAGAGAGTACCGCAGAGCTTGGACTGGTGTCGTTACTTGTAAAGTGTTTAGAAATGAGCTCATGCCCCAGCTTGAGTTCTCTAGCTACTCGTCAGTTTAGAACAAAGTGTATATTGGCGCTCTCCATCTGTGTTGAACAATGTGGGATGTGTCAAGAGAGTACCGCAGAGCTTGGACTGGTGTCGTTACTTGTAAAGTGTTTAGAAATGAGCTCATGCCCCAGCTTGAGTTCTCTAGCTACTCGTCAGCTTAGAACAAAGTGTATATTGGCGCTCTCCATCTGTGTTGAACAATGTGAAAGTAACCAACAAGAGCTTCTTCAGAGGGGAGGGGTGAAACTGTTGATTGAGCTCCTTACCCATGATCAGTCGGAAGAATTCAAGAGAGTTGCGATTTTTACACTTCATTGCATCACGAGAAACATCCAAGATTGGAAGGAGGCTTTTGTGGAATCTAATCAACGTGACCGTATACCAGGCTGTGAAACACAGATTCCCCACTTAACTCAAGAGGCCGAAACTCAGACTGAAACGTATGATGCACAGTTTGTCTGCGGCGCAGGGGAATGGGGTGGCAGTCTCACCAAGGTTCCTCCACCTCCTCTTCGAGACGCTGAAACGCAGACAGAGCACTTTACGGTTGAAGGGGTCAGTACAGAACAAAGCAACGGGTGTGTGCAGGTCGCCACACCGCCTGAAGGTCACGCAATAACGGAGGAGTCTCAACAGTCACGCCGAACGACCATTCATCAAAAGAGTCGATGCGTGTCTGTCAAAGTGCTGAAACCTCTCGCCAATCCTTGGAATATCCGGCACAGGAGGTATGCTAAAAGCAAAGATCTTGCCTCTTCATTAACAAAAACACCAAGGGATGACAATAAAGCGCGCTGTGAATTTTGTGCTTCTATTCTCAACAGCAGGAATTTCATGTCGACACTAAAATCATGTAAAACACTTTGCACAGATCATGAACAGCTCAAAGGGAAATTAAAGGACTTAAGGCGGCAGACATGCACAAGATTATGAATATCACTGGCTATTTCGCGTATATTCAGAAAGCAACCGACTTTCCTCGGCATATCATCACTGGCAGTTTAATACCATAGTCTTATGCCTCAAAGAAATTTAATTTACAAATGATTAGTAAATCTTGATCTTCAGGTTCAATGAAATGTGGCTTGAAATGATTCTTTTGATGCAATTCGGCTTATTTAGGTGTATTCTCCTGCACTGTTCATTTGAAACTGTGTTCCTTTTTTATGCTTGTGCTTAAAGGTGCCTTATAGTTTTGCGTCTTGAAGTAAAAAATAACTGTCGATGAACAGATTCACTTTACTTAGACTACTGAGGCATTGGTCAATATATTTGTGGTGAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8C0V1	Telomere repeats-binding bouquet formation protein 1 OS=Mus musculus OX=10090 GN=Terb1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007645 (this species only)

Pfam domain

No Pfam domain signature was detected for amic_s0001.g83.t3. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR042359 all species →	Family	Telomere repeats-binding bouquet formation protein 1	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14014 all species →	TELOMERE REPEATS-BINDING BOUQUET FORMATION PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007129 all species →	Biological Process	homologous chromosome pairing at meiosis	Interproscan
GO:0070197 all species →	Biological Process	meiotic attachment of telomere to nuclear envelope	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25749	TERB1; telomere repeats-binding bouquet formation protein 1	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.