Gene detail

Detailed information of amic_s0002.g10.t1 in Acropora microphthalma

Genomic Location: sc0000002_pilon:150716...162181
NR annotation: XP_015778950.1, PREDICTED: uncharacterized protein LOC107356837 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0002.g10.t1

ATGATGACAGCGGCGAACGTGGTGCTAGTTCTTGCAACTAGTTTGTTTATCGTCGTGATTTCAGAGGCTGCAATCATCAAAGAAAGAAACAAGGGAATCACAGAAGGATTGCTAGCCCTTGGTGTGACGAAAAGGTCTGTTGGAAATGAAGCAGTTTGTCAACCGTATGATCAGGTGTCTCCTCAAGGGTACTGTAAACACATTCTTGGTAACTTGCCTGTATTTGGAACGAAACAACAGCTACAGGATAACGAACAAAAAATGCGGCGTTTTGAATTGTTGAAGACGTACTTTAAATCACTGCCGAAGAGCAGTCCTTACAATTATGAGTTGCGCCAGAGCTGCGTGCTCGTAGTGGATGACATATATTGCCATAACTACTTTAAACGGTGTTACATTTCCTCCGCGCCACAGCCAGTCTGTCGCGATTTTTGCGAAGATTCATTTTTAAAATTATGTGACCGAGAAATCAAGATAGGGGAAGTGTGGCCTTACTACTGGGAAATCATAAACTGCACCACTTTGCCATATCGGAATGAAACAAGCAATTGCTATTATCCTGACGTCATACAAGAGAAATTGAACGTCCTAAAGAGTGAAGAGTGTTTCTATGGGAACGGACGTGGGTACCGTGGTAGTACCAGCACCACAGTGTCCGGATACGAATGCCAATCGTGGAATGCCACAACTTTTCGAGGGGTCTCTGAGGCAATCTTTGCCGATATCAAGAACAGCAGCAATTTATGCCGTAATCCGGTGGGTTTCGCCTTGGATGGGCCATGGTGTTTCACCAAGAATGAAACCTTGGGATGGGAATACTGTAATGTGTCCAGATGCGCAAAAGAAGCGCCATCTAGTCCACCTCTTGATTTTCGCGGTTACAACTTGAGCTCAACAAGCATCATGGTCACGTGGGGAGACGTTCCAAAGTCCTCAGTAAATGGAATAGTAATTGGGTACCATGTGACATGCATCCTGTCGAATTCCTCAGAAGCACCCAAGATCGAGTCGCTCAAGAACCATACCGGCGTTTTCAGAGGCCTGAAAAAATACAGGCGTTATACCTGCTCAGTAAGGGCCTACAACAATTTTGGAAACGGTACTTGGAGTGAAAAACTCGTCATTTCAACTGCCGAAGATGCGCCAAGTGCTCCACCTCAAAGTTTGAAGGCCTGGAATCTAACCTCAACTTCTCTCAGCATCCAGTGGAGCCCAATCCCTATCGGAGAACGTAATGGGAGATTTCTGGGATACATAGTTGAAATAAAACCTGCAGAAGGGAGAGAAGGAGAAAAATTGATGACAAACTTAACAACATACACAAACATTACTTTCAGAGGGCTTAAGAAGTACTTCAAGTATAAAGTCGAAGTTCGTGGTTTGACTAAGCGAGGAGAAGGGCCAATTAAGGCAGTTACTGTCCAAACAGATGAAGATGTTCCAGACCGCCCTCCATCGGAAATTTCCACCTCAAGCCTAGGATCATCTATAATAGAACTCAAATGGAGCCCAGTCCCTCCGGAATACGCCAACGGGAAGGTGCTTGGTTACAAAGTTATAATTTCTGGCGGAAACGGCACATTGGGTAAAAACAGGACTATTACGACGACAAGAACGTTCCACAATATTGAAAAATTAACACCCTCCACGATCTACAGTTTTCAAGTACTTGCGTTTACTGCAAAAGGCGATGGAGCAAGAAGTCGCCTTTACTTTGCGAAAACAGATGGAATCGGTCCACGAACTGGCTTATGGGCCTTCACGGTGACTCCACAGCCAACAAGTGAAGATGGAGTCATCACAGCTGCTGTGCTTTCTAGTATGGCAGCTCTTGCAGCGATTTTAATTGCAGTTTGGTTTATTAAATACAAAAAGAGAGCAGTAGAAAGAGACGATGGAGGTGGAAATGGTCCCATGCCAGCTGCAGATGTTCAACCCTACGCTAGATCCTCCCCGGATTGGCTGGAAACAATTATTTCTTCTCCGAACTGTCATTACGAGCCATGCGATAACGAAAATAGTTCTATCACAAGGCAACGACCTCGCTGCTACGGCAACCTCGCTCCAGATGGGTCGGTGAATCTTGCACCTCATCTGAGGAACATTTTTCTGAAGTTTGAGAGATATTATGAGAACACGCGTTACAAACGGTTGAGACGCACAAGACGATTGTTTGGCCAAACAGGAGACTCAGACGGCAATCTATTGTACAACAGACTCCAGCGTGAAAGCCCTGCTCGGAGTGTTTCTTCTGTAGGTTTCAACATATCAGCAGACAAAACACCAGCTACAGAGTTCCATGAAGAATACAGGAGACGCTGGACTAGCTTGGACGAGCTGAGATTCCACAGGGAACCTGTTTATGACGAAATTGTCAGATGTGAATCGCCAGAGATGGGTGCCGAAATGGAGTGCACATTGAAGAGGCATCGCCGTCGCTTCTCGATTGATCTGGGTGAAGTAAGAGAGTTCATTGCGATCACAGGGGAAATGCTGTCTTCTACAGAAGAGAACACGGCATCGTTCACTGAACTTGAAACATTTTAA

Transcript

amic_s0002.g10.t1

CTGTAGTGACGGACGTGGAAGTCCATTGCACACAATATATTGTGCTTGGTCTTCGGCTCCTTACTTAGCGATATATTAAGTAGTTCGCAACTGAAAGGACAAAAGGAGTTCTACAGTAAGTTTCTGAACTCTGAATTCGTTCCTCGTTCTGATCTAACGTGGATTTCAGGACGCCATGATGACAGCGGCGAACGTGGTGCTAGTTCTTGCAACTAGTTTGTTTATCGTCGTGATTTCAGAGGCTGCAATCATCAAAGAAAGAAACAAGGGAATCACAGAAGGATTGCTAGCCCTTGGTGTGACGAAAAGGTCTGTTGGAAATGAAGCAGTTTGTCAACCGTATGATCAGGTGTCTCCTCAAGGGTACTGTAAACACATTCTTGGTAACTTGCCTGTATTTGGAACGAAACAACAGCTACAGGATAACGAACAAAAAATGCGGCGTTTTGAATTGTTGAAGACGTACTTTAAATCACTGCCGAAGAGCAGTCCTTACAATTATGAGTTGCGCCAGAGCTGCGTGCTCGTAGTGGATGACATATATTGCCATAACTACTTTAAACGGTGTTACATTTCCTCCGCGCCACAGCCAGTCTGTCGCGATTTTTGCGAAGATTCATTTTTAAAATTATGTGACCGAGAAATCAAGATAGGGGAAGTGTGGCCTTACTACTGGGAAATCATAAACTGCACCACTTTGCCATATCGGAATGAAACAAGCAATTGCTATTATCCTGACGTCATACAAGAGAAATTGAACGTCCTAAAGAGTGAAGAGTGTTTCTATGGGAACGGACGTGGGTACCGTGGTAGTACCAGCACCACAGTGTCCGGATACGAATGCCAATCGTGGAATGCCACAACTTTTCGAGGGGTCTCTGAGGCAATCTTTGCCGATATCAAGAACAGCAGCAATTTATGCCGTAATCCGGTGGGTTTCGCCTTGGATGGGCCATGGTGTTTCACCAAGAATGAAACCTTGGGATGGGAATACTGTAATGTGTCCAGATGCGCAAAAGAAGCGCCATCTAGTCCACCTCTTGATTTTCGCGGTTACAACTTGAGCTCAACAAGCATCATGGTCACGTGGGGAGACGTTCCAAAGTCCTCAGTAAATGGAATAGTAATTGGGTACCATGTGACATGCATCCTGTCGAATTCCTCAGAAGCACCCAAGATCGAGTCGCTCAAGAACCATACCGGCGTTTTCAGAGGCCTGAAAAAATACAGGCGTTATACCTGCTCAGTAAGGGCCTACAACAATTTTGGAAACGGTACTTGGAGTGAAAAACTCGTCATTTCAACTGCCGAAGATGCGCCAAGTGCTCCACCTCAAAGTTTGAAGGCCTGGAATCTAACCTCAACTTCTCTCAGCATCCAGTGGAGCCCAATCCCTATCGGAGAACGTAATGGGAGATTTCTGGGATACATAGTTGAAATAAAACCTGCAGAAGGGAGAGAAGGAGAAAAATTGATGACAAACTTAACAACATACACAAACATTACTTTCAGAGGGCTTAAGAAGTACTTCAAGTATAAAGTCGAAGTTCGTGGTTTGACTAAGCGAGGAGAAGGGCCAATTAAGGCAGTTACTGTCCAAACAGATGAAGATGTTCCAGACCGCCCTCCATCGGAAATTTCCACCTCAAGCCTAGGATCATCTATAATAGAACTCAAATGGAGCCCAGTCCCTCCGGAATACGCCAACGGGAAGGTGCTTGGTTACAAAGTTATAATTTCTGGCGGAAACGGCACATTGGGTAAAAACAGGACTATTACGACGACAAGAACGTTCCACAATATTGAAAAATTAACACCCTCCACGATCTACAGTTTTCAAGTACTTGCGTTTACTGCAAAAGGCGATGGAGCAAGAAGTCGCCTTTACTTTGCGAAAACAGATGGAATCGGTCCACGAACTGGCTTATGGGCCTTCACGGTGACTCCACAGCCAACAAGTGAAGATGGAGTCATCACAGCTGCTGTGCTTTCTAGTATGGCAGCTCTTGCAGCGATTTTAATTGCAGTTTGGTTTATTAAATACAAAAAGAGAGCAGTAGAAAGAGACGATGGAGGTGGAAATGGTCCCATGCCAGCTGCAGATGTTCAACCCTACGCTAGATCCTCCCCGGATTGGCTGGAAACAATTATTTCTTCTCCGAACTGTCATTACGAGCCATGCGATAACGAAAATAGTTCTATCACAAGGCAACGACCTCGCTGCTACGGCAACCTCGCTCCAGATGGGTCGGTGAATCTTGCACCTCATCTGAGGAACATTTTTCTGAAGTTTGAGAGATATTATGAGAACACGCGTTACAAACGGTTGAGACGCACAAGACGATTGTTTGGCCAAACAGGAGACTCAGACGGCAATCTATTGTACAACAGACTCCAGCGTGAAAGCCCTGCTCGGAGTGTTTCTTCTGTAGGTTTCAACATATCAGCAGACAAAACACCAGCTACAGAGTTCCATGAAGAATACAGGAGACGCTGGACTAGCTTGGACGAGCTGAGATTCCACAGGGAACCTGTTTATGACGAAATTGTCAGATGTGAATCGCCAGAGATGGGTGCCGAAATGGAGTGCACATTGAAGAGGCATCGCCGTCGCTTCTCGATTGATCTGGGTGAAGTAAGAGAGTTCATTGCGATCACAGGGGAAATGCTGTCTTCTACAGAAGAGAACACGGCATCGTTCACTGAACTTGAAACATTTTAAAGGGAAGACATTTGTCAAGCAGCTACAGTTTTTGGAAAGAATAGTCAGTTAGAAAGTGCAGTGCCATTTATCCCCGACGCCTCTCtgagcatttgctttacccacatataatagggtccacacgaggacagccttgaaaagcgctgattagggtgtcaattgaacccacgagcttggaatagatcaacgttgctccaccgaatgagcaacaatgccagctgagagcagcccataggCCTTTGTTACAGCAAATGGTCAGCCATGAATGATCAGGTAGATGTCGGAATTTAGGGCACTTCATTTAACCCTCCGCCCTTTCCCATTGACTATTCTGTCGATTTCTAATGCCACCTGGCTAACCTTGTGCAATAATTTGATAGTTTAAGGAGTGTATGTCATTGGTAAAGTGAAATTCGTAAAACTATAAATAGAGACATCGGAAGCGTTTTTATAGATGTAGTTTTTTTAATATATGGTTCTCTCTCTTGGCCCTTGGTACGAGGTGAAGATCTCGATCTTTGTAAAAGACGCCATCGTTATTGAGTGACTGTGCGATTGTGCAGTGAACTATATATCGCTGTCGTCTTGAAAGTGGTGGATTTTGGTGTGAACATCCTGGCAGTTTTAGCAAATTTTCTGACGCGTTGCACGTGATGAAGGAGGTCGCTAAGGAATATCGACGCAAGTGCTTTTGTTCATAAAGGAATTTTTCCGTGTTGCGCTATCACTTTAATCTAAGTGTTTTACCCTCTGCAGTTTTCTACATTCCTACAGTCACTTTTGAAGAGGAAATTGACCGTCAGGGTCCTCATTTAAAAGATCTCGTGGTTAAAATCATCGAGGGCAACTTTTTCAGAAGGGACCTGTTTACTTTAATGAAGCTCGCACATTTATGATTTAACTCATAGGGCCCTTTGAtttattttatgttatattgttttagtgtgttttacttACTACTTGATAGTTACTGTGGCCAGTGGCCAAAATTTAGATATTTTGAAAAGTTAGAACAGtcataagaaaagtaacacacaagg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EX02	MAM and fibronectin type III domain-containing protein 1 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q01177	Plasminogen OS=Rattus norvegicus OX=10116 GN=Plg PE=2 SV=2
P12545	Plasminogen OS=Macaca mulatta OX=9544 GN=PLG PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000396 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00051 all species →	Kringle	Kringle domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR000001 all species →	Domain	Kringle	Interproscan
IPR038178 all species →	Homologous_superfamily	Kringle superfamily	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170 all species →	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0002.g10.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.