Gene detail

Detailed information of amic_s0002.g131.t1 in Acropora microphthalma

Genomic Location: sc0000002_pilon:1674315...1676333
NR annotation: XP_029191077.2, protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0002.g131.t1

GTAGTATCATATTTTGTGGCAAGACATTTTGACAGGCATACACAACAGTAGTTTTGTTCAGTTCTAAAGTTGAACGCGTTATGCTGAACTTCGTCGCCCAAAAAAAATTTTACATGTTGGTTGAGATTTTCTCTCCTTCGTTGCTTTATTTTTCCTTGGGTGTTTTTTCCAGTTTTTTCTTAAATTTTACCTTAACGAGACTAGGGACTTCAGACGAAAGCACTTTGAAAAGGACAGAAAAAAACGAACTTAGAGATGGATCCAGCATGTGGTGCACTGGTCACAACCGATCTTCACGCATTTGCAAATTTCGTTTCTTGTGCTATAACCCAACGTTTGACCAGTACTTGTTTTTTCACGGTCCCGAAACAGTCATTGAAGGCGTACCTTCAAATCGCTTCGATCCTGCTTTTCTTGACATGTCTTCCATCGAAGATCATAACACTCAGTACTTCAACTATGTGGACTATCCCGTTCAGGCCTTAGAAAGCTTTCCTAATATCATCATGATTGACGATTTTAGTGTGGTTTTCCATAGATTTCACCCGGGGAATATCATGCATGTTTTTCACGATGACCTCTTGCCTCTGTATCACACATTGAAACAATTTTCAATGAGAAAGCAAGCAATTGATTGGGAGTCGAAATTAGTTTTCATGGAAGGCTGGGACGAAGGACCTTATATCGAGTTGTACAAAGTATTTGCAAACACAGATTTCATCCTCAAAAGGGATATTAAGATGGGCAATAGCCTGACGTGTTTTCGTCATGGTATCGTTGGAGTATCAAAATATACAACTTGGTATCATTATGGCTTCAAGCAACCTCAAGGGCCACTTCCTCATATTGCTCTAACAGGTCAATATTTACATCACTTTACAGGGTTCATTAAAAGAAGGCTGGGAATACTAAATGGACACTCTAATTCTGAAGATCATTATGTTGTGTTATGCTCAAGGGACAATAATCGGTTAATTATCAATGAACTAGACTTGTCATTGGCAATTGCAAGACATCTTAACAAGCAGGTTATTAGATTGAGTCTGGATACACACTCCCTGAGAGAGCAAATTCAGCTGATCAGTCATGCTGATGCTCTTATTGGAATGCATGGGTCAATATTGATTATGGGGATGTTTCTTCCTCCTGGTGCAAGTCTCATTGAGCTATTTCCATTTGGCATCAATCCTGATAATTATACACCATACCGTACCATGGTAGAACTTCCTGGTATGAGCATCAGTTATCTGTCTTGGAAAAACAAGATTGAAGAGAACACCATTACATATCCTGATGAGGCACCAGAATTTGGTGGAATCATTCACCTTAGTGAAAAACAACAGCAAGACATTATCAATACAAAAGAAGTGCCAACTCATTTATGTTGCAGCAACCCCTACTGGCTTTATAGAATTTATCAAGACACTGTTGTTGATATTCCCTCGTTTTTACAAGTCCTCAAATCAACTGTGAATAGACAGAGAATGACACAATTTGCCCTGCAATTCCACAGACTTTACCCAGGTAAAGTTGTTAACATAACATGTGGCATTCCATCAGACAATCAACAGCCTGCATTGTGGTTGTCCTGGAAGCCACCCACAAATATTCACTACATAAATGCTACAGATGTCACTTATGAAGTGTGGATTCAAGAAGTGGAAAGAGACGATTATGTCGCATACAAACTGGATTTCACCGAGTACGTGTTCAAAGATCATCTCCGAAGCAACACGCAGTATTATGTCTGGATAAGATGTATTGTTGATGATGTTGAAGGCCCTTTTGGAGAAGCTGTTGAGTGTATGACACTGTAGTAAAAAATTATGTGTCACTGGTACTTTTATTTCATTTTGCTGAATTTGGCCAAATTATTGCCACAACTTGAGTGCTGAAAGTGTCCTACCTGTCTCCATTATAGCCAACAGCACAGGGAAAGAGATCCCATTTGTCTAATCTTTTCCTTTTTCGTTTTACAGAACTCTCTTACTGAGAAACTTTTTCGTATCACAAAATCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5NDE7	Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 OS=Xenopus laevis OX=8355 GN=pomgnt2 PE=2 SV=1
Q5NDE3	Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 OS=Tetraodon nigroviridis OX=99883 GN=pomgnt2 PE=2 SV=1
Q5NDE6	Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 OS=Xenopus tropicalis OX=8364 GN=pomgnt2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008793 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04577 all species →	Glyco_transf_61	Glycosyltransferase 61	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR049625 all species →	Domain	Glycosyltransferase 61, catalytic domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR007657 all species →	Family	Glycosyltransferase 61	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20961 all species →	GLYCOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan
GO:0097363 all species →	Molecular Function	protein O-acetylglucosaminyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18207	POMGNT2, GTDC2; protein O-mannose beta-1,4-N-acetylglucosaminyltransferase	EC:2.4.1.312	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.