Gene detail

Detailed information of amic_s0002.g258.t2 in Acropora microphthalma

Genomic Location: sc0000002_pilon:3145037...3173115
NR annotation: XP_015751774.1, PREDICTED: uncharacterized protein LOC107331677 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0002.g258.t2

ATGTATTATGTTTGTGATCATCTCGGTTTCAATTGCTCTACAATTGCAGTAGCAAAGAGGCCTGCTAAGGAATGCAGATGTGATAGACATGAAAACAGCGGCAAAGTATATCTCAGAGTGAATTGTTCAAGTTTACAAATGACTCAGATTCCCAATGGTGACCTCCCTGCAACCACAAAACTTCTTGATCTGAGCAGTAACAAGTTACAGAGGATTGAGGGCGCGAATTTTACTGGCCTCCGATTTATTACGGAGTTAAATCTCGCAAGCAATCGGATTGACAGCGTCGCAAACGAGAGCTTCCGAACTTTGACAAGCCTGTTTGCCCTAAATTTGTCCAAAAACCGTTTGCAACAAGTTCACTGGAAAATGTTTTGGGGGCCGCTTTCGTTAATGAGCTTGGACTTTTCACACAACTACATTTCGAAAATACCTTCAAAGGATATTTCGCGGAAACCTAAACTTGAAATTCTGAAGCTGGGACATAACAACATCTCCGAGGTGACGTCTGGTGCACTTCCCGCTGTTCCTGAGCTCTCATTCTTGGATTTGTCCCACAATAACATCGAGAAGATCCATCCAGCAGCATTTGAAGATGTTCCCAAAGTTTTTATGCTTGAACCTGCCAGGAAAGTTGTCAATTATGAACTTGCTCTGCCACGTAATATTGAGATTGTCATGTCTTCATCAGGATTCCAATGCAATTACCATGGCAACAACGTCAACACCTGTCGCCCTTGTCCTCTTGGGACATATGAAGTAAACCAAGAATGTATTCCATGTCCAGCAGGTGGCGTCTATCAAGACGAGGTAGGGTACACAGGCAGATCCTCTCATGGCATTGGGTGTAAGTCATGCCCGGTAGGACACTATGTGCCACCCACAGCTGCTCCAGGCAAGGCCGTTAGAGAATGTGTTTTGTGTCCACAAGGTACCGATTACTCGCGATACGCCGGTTTCAAAGGTTGCGAGTGCCTTCCGAACTTTTATCGATTGGATCGATTCGGTGGTTGCACACAATGTCCTTTACGAGGCTTGTCGTGTCAAAATGAATCCATCAAACTTCAGGCTGGCTTCTACTGGAAATGGCCGTCAAAAAAGAGTCTTGAACTGTACCAGAAGTTTTCGCGGGATCTCATGATCACCGACACTTCATACCGAAGTGAGCGATTTAACGGGCAAATACCCGAGGTTTACGCGTGTCCCGTGCCTGAAGCATGCCTTGGAGGCGTGGATTCGAGGTGTTCCCATGGTTACGAGGGTCCTCTCTGTGCTGCTTGCAGCGTGGGATATTATCAACTTCTGAACAATTGTCGCAAGTGTCCTAAAACTATTTGGTTTGTTTTACAGGTCTGTGGAATCGTAATCGTTTTTGGTTTTCTCAGCGTGAGTCTCGTTCTTGCCAGAAAAAAGAAATGCAATCCGAACAGGACTGTAAGCGACATGGTACTTGCCCGGCTGAAAATCCTGATCGGCTTTTATCAGGCCACTTCCGGTACCTTGAACGCCTTTTCGTATGTTGCTTGGCCAAATGCTCTATTGACCGTTGTGCAATATGCAAACGTGATACAGCTCAATCTCTTGCAGATCATTCCATTGCAGTGCTTTGTTGATACTTTTACCTTAAACGCCTATACCAGGTTTTTGATCGCCGTGGGAATAAACTCCACAGTCCTCTTCTTAGCAGTATCGATTTATCATCTAAGGAAACGCTTCATGTTAAGGAATACTGCCCTTAGCGAAGCCCAATTGGCAGAATCCATTGCATGTATCAAAACGCAGACATATCGCATCGTGTGCCTTGTGCTCTTCATTACATATCCCTGGACATGCGACGCTGTTTTCCAGCTTCTACCGGCCACCTGTCAACCGATTTGCTCCAGTGACAACAGTGATTCTTGCCAGTTCTTCTTACGCGCTGACGTCACTGTCCAGTGCTTTACCGATAAGTACAACAAATACACGATAGCGGTGTACCTTATGCTCGCCGTGGTGGCTGCTGTGCCGGGAATCATTTTCCTTCTGCTTTGGAAATACCACCACAGGAGAGTCTACATACAATCGGAAGCTCAGAGTTACATTGGAAGGGAGGTCTCTCAAGGTTTAAGCTTGCTTCACGAGAACTATGCTCCAAACTGCTGGTTCTGGGAAATTATCGAACTGCTGAGAAAGGTGTGGCTGACGTCGGCGCTATTCTTGATGGGAGCAGAAACGAGAAGCCATCTGGGAGCCGCAGCCATCGCATCCGGGACCTACTGCATTCTTGTGGCTTATTATAAGCCAATCAGAGACAAATTCGAGCACTGGTTGCAGTTGACATCACTGTTAGCGATCTTTGTGACTATGAATATTGGAATTCTGTTGAAGATACCAGCGGAAGAAGTATATTCCCATGATGCAGCCGGAAGAGATTCCACCTTCCTCACTGTTGCTCTAGTGGCGGTCAATGTCACTGTTATTGGAATAATCATCGTTCAGTACATCGCGACATTAGTCACTGCCTTGAAACGCCTGAGAAGCAACCCGCAGTGTGGACCCGAATGCTGTATAACATTTTTGACGCAGATGATGGGAGCTGGGGGTGACGCCACGAGTATTGACAACACAGGAGAGATTCCAAACTCAATGGAGTTGCGACCTACATCCGCTACCAAGTGA

Transcript

amic_s0002.g258.t2

GTAGGATTGGTATTCTGTTGTCTATAGAGGGCCTTTTGGAATGATTCCATGAGGTTCTCAATTCTTGATTCTAGAAGAACAAGAACTCCATTATATTTTTGTTAAAAAGAGCATCTTTTTACCTGCGCTCAATATTTTGTACGAATTTATAATTTAAAGTTTAATAACCTTGCATCTCTGCTTTTGCTGTTATCTTGCATCGATAGGGTCATAATGTATTATGTTTGTGATCATCTCGGTTTCAATTGCTCTACAATTGCAGTAGCAAAGAGGCCTGCTAAGGAATGCAGATGTGATAGACATGAAAACAGCGGCAAAGTATATCTCAGAGTGAATTGTTCAAGTTTACAAATGACTCAGATTCCCAATGGTGACCTCCCTGCAACCACAAAACTTCTTGATCTGAGCAGTAACAAGTTACAGAGGATTGAGGGCGCGAATTTTACTGGCCTCCGATTTATTACGGAGTTAAATCTCGCAAGCAATCGGATTGACAGCGTCGCAAACGAGAGCTTCCGAACTTTGACAAGCCTGTTTGCCCTAAATTTGTCCAAAAACCGTTTGCAACAAGTTCACTGGAAAATGTTTTGGGGGCCGCTTTCGTTAATGAGCTTGGACTTTTCACACAACTACATTTCGAAAATACCTTCAAAGGATATTTCGCGGAAACCTAAACTTGAAATTCTGAAGCTGGGACATAACAACATCTCCGAGGTGACGTCTGGTGCACTTCCCGCTGTTCCTGAGCTCTCATTCTTGGATTTGTCCCACAATAACATCGAGAAGATCCATCCAGCAGCATTTGAAGATGTTCCCAAAGTTTTTATGCTTGAACCTGCCAGGAAAGTTGTCAATTATGAACTTGCTCTGCCACGTAATATTGAGATTGTCATGTCTTCATCAGGATTCCAATGCAATTACCATGGCAACAACGTCAACACCTGTCGCCCTTGTCCTCTTGGGACATATGAAGTAAACCAAGAATGTATTCCATGTCCAGCAGGTGGCGTCTATCAAGACGAGGTAGGGTACACAGGCAGATCCTCTCATGGCATTGGGTGTAAGTCATGCCCGGTAGGACACTATGTGCCACCCACAGCTGCTCCAGGCAAGGCCGTTAGAGAATGTGTTTTGTGTCCACAAGGTACCGATTACTCGCGATACGCCGGTTTCAAAGGTTGCGAGTGCCTTCCGAACTTTTATCGATTGGATCGATTCGGTGGTTGCACACAATGTCCTTTACGAGGCTTGTCGTGTCAAAATGAATCCATCAAACTTCAGGCTGGCTTCTACTGGAAATGGCCGTCAAAAAAGAGTCTTGAACTGTACCAGAAGTTTTCGCGGGATCTCATGATCACCGACACTTCATACCGAAGTGAGCGATTTAACGGGCAAATACCCGAGGTTTACGCGTGTCCCGTGCCTGAAGCATGCCTTGGAGGCGTGGATTCGAGGTGTTCCCATGGTTACGAGGGTCCTCTCTGTGCTGCTTGCAGCGTGGGATATTATCAACTTCTGAACAATTGTCGCAAGTGTCCTAAAACTATTTGGTTTGTTTTACAGGTCTGTGGAATCGTAATCGTTTTTGGTTTTCTCAGCGTGAGTCTCGTTCTTGCCAGAAAAAAGAAATGCAATCCGAACAGGACTGTAAGCGACATGGTACTTGCCCGGCTGAAAATCCTGATCGGCTTTTATCAGGCCACTTCCGGTACCTTGAACGCCTTTTCGTATGTTGCTTGGCCAAATGCTCTATTGACCGTTGTGCAATATGCAAACGTGATACAGCTCAATCTCTTGCAGATCATTCCATTGCAGTGCTTTGTTGATACTTTTACCTTAAACGCCTATACCAGGTTTTTGATCGCCGTGGGAATAAACTCCACAGTCCTCTTCTTAGCAGTATCGATTTATCATCTAAGGAAACGCTTCATGTTAAGGAATACTGCCCTTAGCGAAGCCCAATTGGCAGAATCCATTGCATGTATCAAAACGCAGACATATCGCATCGTGTGCCTTGTGCTCTTCATTACATATCCCTGGACATGCGACGCTGTTTTCCAGCTTCTACCGGCCACCTGTCAACCGATTTGCTCCAGTGACAACAGTGATTCTTGCCAGTTCTTCTTACGCGCTGACGTCACTGTCCAGTGCTTTACCGATAAGTACAACAAATACACGATAGCGGTGTACCTTATGCTCGCCGTGGTGGCTGCTGTGCCGGGAATCATTTTCCTTCTGCTTTGGAAATACCACCACAGGAGAGTCTACATACAATCGGAAGCTCAGAGTTACATTGGAAGGGAGGTCTCTCAAGGTTTAAGCTTGCTTCACGAGAACTATGCTCCAAACTGCTGGTTCTGGGAAATTATCGAACTGCTGAGAAAGGTGTGGCTGACGTCGGCGCTATTCTTGATGGGAGCAGAAACGAGAAGCCATCTGGGAGCCGCAGCCATCGCATCCGGGACCTACTGCATTCTTGTGGCTTATTATAAGCCAATCAGAGACAAATTCGAGCACTGGTTGCAGTTGACATCACTGTTAGCGATCTTTGTGACTATGAATATTGGAATTCTGTTGAAGATACCAGCGGAAGAAGTATATTCCCATGATGCAGCCGGAAGAGATTCCACCTTCCTCACTGTTGCTCTAGTGGCGGTCAATGTCACTGTTATTGGAATAATCATCGTTCAGTACATCGCGACATTAGTCACTGCCTTGAAACGCCTGAGAAGCAACCCGCAGTGTGGACCCGAATGCTGTATAACATTTTTGACGCAGATGATGGGAGCTGGGGGTGACGCCACGAGTATTGACAACACAGGAGAGATTCCAAACTCAATGGAGTTGCGACCTACATCCGCTACCAAGTGAGATGCCCCACGCCGAAAGAAAAAAAAAACATAAAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000105 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR050328 all species →	Family	Multifunctional Developmental and Immune Receptor	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24373 all species →	SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0002.g258.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.