Detailed information of amic_s0002.g319.t2 in Acropora microphthalma

Genomic Location: sc0000002_pilon:4232127...4265885
NR annotation: XP_029188195.2, uncharacterized protein LOC114955505 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q587J7Putative ATP-dependent RNA helicase TDRD12 OS=Homo sapiens OX=9606 GN=TDRD12 PE=1 SV=2
Q1XG89Putative ATP-dependent RNA helicase TDRD12 OS=Bombyx mori OX=7091 GN=TDRD12 PE=1 SV=2
Q9CWU0Putative ATP-dependent RNA helicase TDRD12 OS=Mus musculus OX=10090 GN=Tdrd12 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002813 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04969
all species →
CSCS domainDomainInterproscan
PF00270
all species →
DEADDEAD/DEAH box helicaseDomainInterproscan
PF00567
all species →
TUDORTudor domainDomainInterproscan
PF00514
all species →
ArmArmadillo/beta-catenin-like repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011989
all species →
Homologous_superfamilyArmadillo-like helicalInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000225
all species →
RepeatArmadilloInterproscan
IPR035437
all species →
Homologous_superfamilySNase-like, OB-fold superfamilyInterproscan
IPR007052
all species →
DomainCS domainInterproscan
IPR011545
all species →
DomainDEAD/DEAH box helicase domainInterproscan
IPR002999
all species →
DomainTudor domainInterproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR014001
all species →
DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR008978
all species →
Homologous_superfamilyHSP20-like chaperoneInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22655
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0042078
all species →
Biological Processgerm-line stem cell divisionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K18409TDRD12; ATP-dependent RNA helicase TDRD12EC:5.6.2.5
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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