Gene detail

Detailed information of amic_s0002.g384.t1 in Acropora microphthalma

Genomic Location: sc0000002_pilon:5073010...5079628
NR annotation: XP_029188158.2, uncharacterized protein LOC114955481 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0002.g384.t1

GTATTAAAGTTGAGAATTCTCCCAACCATTTCTTCCAAATGTTGTTGTAATTCTGGTATTATCTCCAGCATTATGTATGATTCCTAGAGAAGATGGTTGTGTTTGCCAAATGAATGTGTTCCTTGTAAATTTCATTATAACAATATACAGATCTACGCTGACAACAGGAGTTAAATTAGTTGCTTTCCCTGGCATTGGTGCTCCTCCTAGATTTTGAATACCTCTGCATGTATGAGTTAGGTGTCTTGAAACACAGGAAATTGAAAATGAAAGAAGAATATTACCTAATTCTTACTCCAACATGTTCCTGTTCATTTAAAAGCAACCAACTTTTTGAATATTCATTGTGTCCAAAGGTTTCTTGGTTGAATTTTGCTTTTAATACCAGGCACATTTTTGTTAATTGCCAGTAGTAAATTGTGACAGATGTACTCatgtaatattatttaatattttgtagtattataacacatcaaatatcaatattattttattatgtattattTTCATACACAGTTGTTATGTTGCAGAGATACCAACCCTTCTGTTTTGGCCAGAAACCTCCAGTTTTCAGGGAGTACATGTATTTCCAGCTTCACGTGTTTGCTTTATATTTTCCTGGTTTTTGTAACTCTTCCTAGCCAAAGAAACTTAATGTTTTCTTTGTTAACAGCAGCATCATCAAAAACTATGTCCCCGTTTAAACTAGTCTTTTTAGCATGGGACATGACCAGTAGGCTGTAGCTGTAGCTGTCACTGGCTGGAATCACTGATATCGTACATTGTTTAAATTTTTCTATTTCTTTGCCTGTCTAGTGGAATTGATGATCAGTATTGAAATTGATAATTGTGCAATGAAAGAAAAAATTCCTTCATTTGTAGGCAGTGGTAGTGTTGAAACAAGTAAATGTATGTTTATTTTCGTCGTGTATTTCACTTGTTTTAAATGACCGTGTGTTATTAAGTGAAGTTGCATGAGAAATGGGAACAGCACCAATTAATATTGTAAAAGGAAATCAGGAGTTCATTATTACTTTCGGTCCTTTCTCTACGTTCACTATCCAAATCCCATTTCTAAACATTTCGGTTTTTTATTCGTGTCCCATGCGTTTCTGGTTCATTTCCCATTCTATTTTACATAAATGGCGGAGGAAACGGAATGGGGACATACGTCGGCAACATATGTACAAGGGAATGTGAATGAAATCAGAATCAAAGAGAGAGAAGGTGCTTGTGGAATTGACCCTAATTTCGAGATCTCGTTAGAGCAATGTTTGATGTGTGGAGTGAACCATGACATTCCCGAATTTGGACCTTATTGTGCGTTATGCCACGACTTCTTGTTTCCCACCGCTATGCAACTGCGTCAAAGAAAAAGTAATAAACATGCGACGTCACAAATGATTGACCCGTCAGAGTCCATAGAAGGTAAACTTGGCGAAGTCAAGCTTTCGCCTGCAGGTGCCGGTTTGGAATCGGAGGGAAACAAAGAACGAGAAAGCTCTCAGCTGCCAAAAGGAGATGATCTAGAAATTAGAGGACTTACAGAAAGCACCGAGCCGTCAAGATATAAGCTGCCGTATCTATCGCTTTATGAAGGAATTCGTGGGCCAAACGTCGCTGCTAAACGAATAGCAAAGAAACTGAATTCGATGGAAGGTGATGTGATGAAGTCGTTGCCACCAGAAATTCTCCTCTTGATATTCTCCTTTCTGGATGATATTTCTGTCTCTATGGTGGGCCAAGTTTGCCATTTGTGGCGTCAACTTGTTGGACAGTCGAACCAGTGGCGTAAGCATGTGTTCTCAAGGTGGCCACTCTTTAATGCTGCCAAACCCACAGCTTGGCAGAAACTCTACATAGATATGTTAAAAGGTGTTTCATGCAGAAGGTGTTTTGAGCAAGGATGTGTTCAACGTGCCATTGATGATTATCCTGTAAACTCAGGGCGGAATAGGAGACTGAGAAACGAGCTAAGAGACCTTTTAAAAAATCCCACTGAGGGAATCCATGCATGCGCTTTGGACGCAAGCTTATCTTATTGGCAGGCATCAATCAAAGGCCCTCCTGATTCTCCTTATGAAGGTGGCCTGTTTTTTCTTCACATTGAATTTCCCAAGAGTTATCCATTTAGGCCACCACTCATTAAGTTTATAACAAGAATTTTCCATCCTAATGTAAGTTACCATGGCGACATAGGAGTGAATATCTTAAAGCACGATTGGGCTCCGATACTAATGTTAACCAAGGTATTGGTTAGTATCTGATCGCTTTTGATAAATCCCTATTGTCGAATATCAATGGAACCGGAAATTGCTAATATCTGTGAAAAGGACAGAGAAGGATTCAACAGAATTGCTGCAGAGTGGAGTAGAAAATATGCTCAAGCGCATTTGACTTTATGACGTTCTCATTAATTTTTGTCGGTGAGGCAGAAGATGACTGTTGGGGCCTGTCATTGCTGGTTGGAACATCATGACAACCCTGGGACATCAACAACAATGCTTTCAGTCAAGAATTGTATGATTGTGACTTCTCAGTTTTGCTAGACAACAGTGGCTATAAAGCGAAATACACAAAAATACATGACAGTGCAGGCAGAAATTAAAGCTTAACATACAAAAAGTTCTATTTTTCTAGGTTGAGCAAAAGGGACAGGAAACGGAATTCATTACAAAATACACAACTGTTGAAAATAATGTCAATTTTGAACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P25867	Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster OX=7227 GN=eff PE=1 SV=1
P15731	Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UBC4 PE=1 SV=1
P35129	Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans OX=6239 GN=let-70 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000654 (this species only) · gene tree & orthology
Ubiquitin family	E2\|UBC\|UBC · all ubiquitin genes in this species
Ubiquitin family	UBD\|UBC-like\|UBC · all ubiquitin genes in this species
Ubiquitin family	E2\|UEV\|UEV · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF00179 all species →	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR000608 all species →	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR050113 all species →	Family	Ubiquitin-conjugating enzyme	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24067 all species →	UBIQUITIN-CONJUGATING ENZYME E2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0002.g384.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.