Detailed information of amic_s0002.g434.t3 in Acropora microphthalma

Genomic Location: sc0000002_pilon:5699412...5703301
NR annotation: XP_015780934.1, PREDICTED: ranBP-type and C3HC4-type zinc finger-containing protein 1-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
E6ZIJ1RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Dicentrarchus labrax OX=13489 GN=rbck1 PE=3 SV=1
A9JTG5RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Danio rerio OX=7955 GN=rbck1 PE=2 SV=1
Q62921RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Rbck1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003398 (this species only)
Ubiquitin familyE3|E3 activity|RBR · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13639
all species →		zf-RING_2Ring finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047558
all species →		DomainHeme-oxidized IRP2 ubiquitin ligase 1, BRcat domainInterproscan
IPR047559
all species →		DomainHeme-oxidized IRP2 ubiquitin ligase 1, modified RING finger, HC subclassInterproscan
IPR047557
all species →		DomainHeme-oxidized IRP2 ubiquitin ligase 1, Rcat domainInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR044066
all species →		DomainTRIAD supradomainInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR051628
all species →		FamilyLinear Ubiquitination-Associated E3 LigasesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22770
all species →		UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000151
all species →		Cellular Componentubiquitin ligase complexInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0043130
all species →		Molecular Functionubiquitin bindingInterproscan
GO:0043161
all species →		Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0097039
all species →		Biological Processprotein linear polyubiquitinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10630RBCK1, HOIL1; RanBP-type and C3HC4-type zinc finger-containing protein 1EC:2.3.2.31
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP