Gene detail

Detailed information of amic_s0002.g466.t2 in Acropora microphthalma

Genomic Location: sc0000002_pilon:6236789...6252268
NR annotation: XP_029184398.2, rhophilin-2-B-like isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0002.g466.t2

ATGCCAGCGAGAATGACAATGGAAGTTAAGTTGAAGGATAGCGTCGACTCGTCTTCGTCTGTTAGGAAGAAAGACAGTGCGGCTGTAGTGGTCGAAGGAGAATTTGGACCTCGTCAAACATCGGCTCGATGGAGACTCCAGCACAAACGACAAATTTTGAATAAGAAAATACTGAGACAGACGAAATTGCGAGACGGCGCAGAAAACTTGATGAAAGCCCTCAGAATCACAAACGATCGGAAAACTAAACTTGCTGCCAAGACGGAACTGAACTTTGCTAATTCCCAGTTGGAGGCACTGAAGGAAGAACTTGAAGGGATAAACAGCACCCTAGATGTGTATCAGTTTGATCGGAGTGTTGAACACCAAATACCTTTGATAGCGGTGGGTCTCAGAGAAACAAAAGACCTTGATTTTAAAGATCATTTCAAGGACTTTATTTTGGATCATTATAGTGAGGAACCAGAAAAATATGAAAAGGAGCTGGATCTCTTTGAAAACATGAGAAAGGAAGCAGTTTCTAGAGTTAACAGAGATGAAACTGGTGTTCATGCCTTGCTTATATATTATAATCAACTCTATTTTGTGGAAAGGAAGTTCTTCCCAAAAGGAAAGGATAATGCTATGCCTGTCTATTTTCACTGGTTTGATACTACCTCTGGTCTGCCAAAAATACAAAGATCTATTGCTTTTGAAAAGGCCAGCATTCTTTTTAACATTGGATCGATTTGGAGCCAGATTGGTGCTAAACAAGACAGAAGAACACAATCAGGCCTTGAAAAGGCTATTGATGCTTTTAATAAAGCTGCAGGTGCCTTCAAATCAATCAAAGAGAACTTTATTAATTCTCCAACTGCTGATTTGACGACAGAGCTAATGGACATGCTCATAGCTGTTATGCTGGCTCAATCACAGCTCTGCATTTGGGAAGATTGTGTACTTAAAGGAATCAAAGATACATTAGCAGACCTGATAAGTGCTGCTCAAGAGTGTGCTGAGATCAGCCATAGATATAAGAAGGCTCAAATGATGATGAATGCAGGGGTCTGTCTTTGTCGTGTTCCCTCTTCATGGAAAAGCATGATGAATATCTTGTGTCTTCACTTCAAAGCTTTGTCTCATTTTTTTGTTGCTGATGGGCTTCTGAAAAACATTGATTCTAACGATGACAAGCACAAAGAGATAGTGGCTTCATTACTACAGAGTTCACAGGCAGACGATGATGCAAATAGAACTAAGCAAGCCAAGGCACACCTGCATTCTGCATTGAAATCTCATGAGGAAGCCATGAAAGCCAGACAGATTTGTAGACATTGCAGACAAGTAGCAGGACTACAAAAGGCTCTTCATGATGCTCGTGTGAAAAGTACTAACACACTGGTTGCCATGGAAGAAGAAGATGATTTTGATGATCCTATGACACCAATTTCTGTCAAAGCATTGGCAAGAGTCAAAGCAACTTGTATTCTGCCAAACTTCTGCAGTGCCTCAGTAGAAGACTTGTTTCATAGGCTGGGTCCAGTACATGTTTTTAATGCGCAGTTAGCATGGAGTGCACCACGATCTATTGAGCTGGAAAGAAAAAATGGTGGATATGGTTTCAGTGTTATTGGCTCTGCTCCTGTGATTATCCAGAGTGTGGAAAATGATGGAGCTGCAAAGGAAGCTGGGATTCAAGTAGGAGACATAATTGTTCAAGTGAACAAGACAGACTGCAAGTGGGGTGACCACACATCTGTAGTGTCGTTGATTCGAAAGACTGATGCTAGTGTGACCATTGATGTTGTGACGCCCGTGTCTCTCAAGGAAATTGCTGAGATATACAACTGCAAACTAACCAAGAATGAGCAAGTTGCAACAAGTGATTATGGCAGTTCGGTTGGCAGTGAGAGTTCTGATTCATCACGAAACAGTACTCTTACTGGAGTGTATTCCCTCACAGGAAGCACTTCGTCTGGTTCAGCATCTTGTACTGCCTCTCGCCACAGCGTTGTCTTGGCGACAGGCAATTCTTCAATATTGTGGTAG

Transcript

amic_s0002.g466.t2

TGTGAACTGATTTGCGCAAAATATCTTGTCAAACAAAGGATCCCATGCCAGCGAGAATGACAATGGAAGTTAAGTTGAAGGATAGCGTCGACTCGTCTTCGTCTGTTAGGAAGAAAGACAGTGCGGCTGTAGTGGTCGAAGGAGAATTTGGACCTCGTCAAACATCGGCTCGATGGAGACTCCAGCACAAACGACAAATTTTGAATAAGAAAATACTGAGACAGACGAAATTGCGAGACGGCGCAGAAAACTTGATGAAAGCCCTCAGAATCACAAACGATCGGAAAACTAAACTTGCTGCCAAGACGGAACTGAACTTTGCTAATTCCCAGTTGGAGGCACTGAAGGAAGAACTTGAAGGGATAAACAGCACCCTAGATGTGTATCAGTTTGATCGGAGTGTTGAACACCAAATACCTTTGATAGCGGTGGGTCTCAGAGAAACAAAAGACCTTGATTTTAAAGATCATTTCAAGGACTTTATTTTGGATCATTATAGTGAGGAACCAGAAAAATATGAAAAGGAGCTGGATCTCTTTGAAAACATGAGAAAGGAAGCAGTTTCTAGAGTTAACAGAGATGAAACTGGTGTTCATGCCTTGCTTATATATTATAATCAACTCTATTTTGTGGAAAGGAAGTTCTTCCCAAAAGGAAAGGATAATGCTATGCCTGTCTATTTTCACTGGTTTGATACTACCTCTGGTCTGCCAAAAATACAAAGATCTATTGCTTTTGAAAAGGCCAGCATTCTTTTTAACATTGGATCGATTTGGAGCCAGATTGGTGCTAAACAAGACAGAAGAACACAATCAGGCCTTGAAAAGGCTATTGATGCTTTTAATAAAGCTGCAGGTGCCTTCAAATCAATCAAAGAGAACTTTATTAATTCTCCAACTGCTGATTTGACGACAGAGCTAATGGACATGCTCATAGCTGTTATGCTGGCTCAATCACAGCTCTGCATTTGGGAAGATTGTGTACTTAAAGGAATCAAAGATACATTAGCAGACCTGATAAGTGCTGCTCAAGAGTGTGCTGAGATCAGCCATAGATATAAGAAGGCTCAAATGATGATGAATGCAGGGGTCTGTCTTTGTCGTGTTCCCTCTTCATGGAAAAGCATGATGAATATCTTGTGTCTTCACTTCAAAGCTTTGTCTCATTTTTTTGTTGCTGATGGGCTTCTGAAAAACATTGATTCTAACGATGACAAGCACAAAGAGATAGTGGCTTCATTACTACAGAGTTCACAGGCAGACGATGATGCAAATAGAACTAAGCAAGCCAAGGCACACCTGCATTCTGCATTGAAATCTCATGAGGAAGCCATGAAAGCCAGACAGATTTGTAGACATTGCAGACAAGTAGCAGGACTACAAAAGGCTCTTCATGATGCTCGTGTGAAAAGTACTAACACACTGGTTGCCATGGAAGAAGAAGATGATTTTGATGATCCTATGACACCAATTTCTGTCAAAGCATTGGCAAGAGTCAAAGCAACTTGTATTCTGCCAAACTTCTGCAGTGCCTCAGTAGAAGACTTGTTTCATAGGCTGGGTCCAGTACATGTTTTTAATGCGCAGTTAGCATGGAGTGCACCACGATCTATTGAGCTGGAAAGAAAAAATGGTGGATATGGTTTCAGTGTTATTGGCTCTGCTCCTGTGATTATCCAGAGTGTGGAAAATGATGGAGCTGCAAAGGAAGCTGGGATTCAAGTAGGAGACATAATTGTTCAAGTGAACAAGACAGACTGCAAGTGGGGTGACCACACATCTGTAGTGTCGTTGATTCGAAAGACTGATGCTAGTGTGACCATTGATGTTGTGACGCCCGTGTCTCTCAAGGAAATTGCTGAGATATACAACTGCAAACTAACCAAGAATGAGCAAGTTGCAACAAGTGATTATGGCAGTTCGGTTGGCAGTGAGAGTTCTGATTCATCACGAAACAGTACTCTTACTGGAGTGTATTCCCTCACAGGAAGCACTTCGTCTGGTTCAGCATCTTGTACTGCCTCTCGCCACAGCGTTGTCTTGGCGACAGGCAATTCTTCAATATTGTGGTAGCACTTTGAGATATGCTGTGCTAGATCCAGAACTGACATAAGTGACTAGTAGAAATTAAAAATAAAGATGTTGAGGGACCATTGTGAAAAGTGATACTATCAGAATGTCCAGAAATGTATGCATTTGAATGCATTCAGATTTTGATGTCACAAATTTTTCCCTCTCGGTTTTCCTTTACTCAAAGATTACATTTGGCAAGCAATACAGACTAAAAAGGTCATGAAGTGTAGCACTATACATAATACTACTCAAGGGCACGCTAAGATTAACCCCAACACAAGCACTAACCATTGAGACTTAATGGGAGGGTTTGTAGTGATCATCAAAAATGGAGCATGTATTTCTGGACAGAAGTAAGTATTTCTGGAATGTAAAGGCTTATTATGTGACGTGTTTATAGTACAGGATGCATTTCACCGAGAAGTATATACACAAGAGCTGGCAATGTTTGTTTTTTGTCATTTATTTGAAAAAAGAGAGAGTAATATACAGCATAATTTTAAATTTCCTTATGTACATTCCCTCCTTATTTTATTTGAAAAACAAATAGTTAATATATTTTTGTATCCCTATATATATTTTATTCATGAAACAGTGGACACAAACCAAAATGTTGCATGTTGATTTTATTTTTTTGAGTATCATGTTTTCTCACTCCACATTACATTAGTACTTGTATTGATATCAATGATAATTATTATTATTTTAATGATAGTATGGGTATATTTTtccttggcctgagaaccagtcaaactcatggatgatgtaaaaaaaaaggaaaagaaaagaaccaagacaccattaaacaatacccaaagctcagcataagctaacggaacaaaggaaaaatatcacaggtcctcaccatgaggtaaaccTAAAAAGAATGCATATCTGCACCTTTCAGAATTATTATATTTCATTGTCTGGTCTTTTTGGTACTTTTTGTTTTACAGATAATGTCCATCCCCTATTTTTATATTGCAAAATAATAAGACTAAAAAATTAATATAAttaacaattagacctgtagccctttcgggctacaggtcaatagcccatgaggcaaagctgaatgggctattgatccgtggcctttgatggcgaagggtctaataattgttttagtatcacacaactagttggacagaaaaggcaaaaatgaagttagcaaatgcaagttgaagaaatatcttttagggggggggaaaaaccaaagaaaaaccggcaaatttcgctactcgatgactattagtataagaccccttgtagcgtagccaatcaaaatgcaggatttgcattagtccactggttgggtgatactaaTCATCAATTATAACAGTGTTCAATAGCCAATGGGAGATAACAAAGGGAAGGGAAAGATTTTAAAAAAAGAGTCAAAAACAATCATTTTTACAAAAAAAAAACAAGGGGGATCCTTATGTTGCTCAAGGGAGGGGGTGGTGGGATGGGGTTAAGGGAGGTGTTGGGCTTAACTGAAAAGTATGTTTTTGGAAAATAAGTGTTAATGCTATCAACACTGAGAAGAGAGAAGTTGAAAGACTAAATTAGAATGACAGGAGAGTCAGATGACAGTTCTATAGTTTTCTTTTGCCCCAATTTTTCCAAAGCTGTGATGGGGAAAATCTCTTCAGACCTGTTTGTTTGAACGGGGCTGCTTGTAACACTGGATCACCAACATAGAATGTGTCAAATAATACTACCAAGGTGGAAATAAATGAAATGAGACCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63ZR5	Rhophilin-2-B OS=Xenopus laevis OX=8355 GN=rhpn2-b PE=2 SV=1
Q6DJJ6	Rhophilin-2-A OS=Xenopus laevis OX=8355 GN=rhpn2-a PE=2 SV=1
Q8IUC4	Rhophilin-2 OS=Homo sapiens OX=9606 GN=RHPN2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007500 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03097 all species →	BRO1	BRO1-like domain	Repeat	Interproscan
PF02185 all species →	HR1	Hr1 repeat	Family	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038499 all species →	Homologous_superfamily	BRO1 domain superfamily	Interproscan
IPR047138 all species →	Family	Rhophilin-1/2	Interproscan
IPR011072 all species →	Domain	HR1 rho-binding domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036274 all species →	Homologous_superfamily	HR1 repeat superfamily	Interproscan
IPR004328 all species →	Domain	BRO1 domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23031 all species →	RHOPHILIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051497 all species →	Biological Process	negative regulation of stress fiber assembly	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0002.g466.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.