Gene detail

Detailed information of amic_s0002.g48.t1 in Acropora microphthalma

Genomic Location: sc0000002_pilon:624237...631018
NR annotation: XP_044175288.1, uncharacterized protein LOC114968687 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0002.g48.t1

ATGTACACTGAATTTGCGTTTGGAATCGTCGACTTAATGGCGGGTCTACCGAACACGATTAGAGTTGGACAACAAAGGCTGAGAATCCTCCAGCACCTTGGCAGTGGAGCTTTTGGAGATGTCTATAAAGTGAAAGACAGAGCTTCCTCCAGAGTTTATGCTTTAAAAGACATCTTATGCACAGACGCTTCTGACATCGACAACGTCGTTAGGGAAGCAGCCACACTCTACCAGTTGTCTCACGAGAATGTGATCACCATCGAAGGCGCTTACCCGTTTGCAAGCCTTGACGATGTCCATATGTTAATCTTGACCGGATACTGCGGTGGTGGAAACCTAAACGAGCGACTCCGACGAAGAAGTAGTGAAGATCAAAATTCTCTTTGGATGATGCAAATGGCTGACGCTCTTTCTTACCTTCATGACAAAGGGGTTGTTCATCGCGATTTAAAACCTGAAAACGTGCTTTTGACGGCATACGAAGAGGTAAAGTTGGCCGACTTTGGTTTGGCTCGAGAGTTCACAGCCCTAAAAACTATGTATCAGCTTGAAGATGATCCAGACTCATGGCTGAGTCACTACACACAATACTACATGAACACTCGCTGTGGAACCCTACACTGGATGGCCCCAGAAGTCTTCACTCGTCATTACACCGAAAAGGCAGATGTGTTCTCGCTTGGTGCTATATTTTTCGCTATTCTTGAGCGAACTTATATCACCCTCAACGGAAAACGATTTTACGGTGCATTTAAGAGAATTCGTCGTGGTCGTTCGCAGAACAGAGTTGGCTTGGGATATGCCATGGCAAACAATCCAAATACGACCATCATATTTTCAAGACTGGCGGAAAATTCTTCCCTACAAAAGATGCAAGAGCTAACCTTTCGTTGCTTGCAGTACGAAGAGGATGATCGACCTAGCGCCGCTGCGGTTTACGATGAGCTCCTAGCAAGGgacgaacgagaagacgaagaagaagaagaagacgaagacgacgaagaagaagacgaagacgaagacgaagatgcagacgaagacgacgaccggccgacgagtttcacacctgcgttacatgttacggacaactacgcatgcggactaagaccaagcaaacaaacTCGTACACGTATCAGATCGAAAGCTGCATATTATAGCACGTGCACTGAACTTACGATTGAAACCATCGACTTAATGGCGAGTCTAGATCTGTCGAACACGGTTAGAGTAGAAGACAAAAGGCTTAGAGTGCTTCAGCATCTTGGCAGTGGAGCATTCGGAGATGTCTACAAAGTCCAAGACAAAGCTTCCTTCACAGTTTATGCTTTAAAAGACATCTTATGCACAGACGCTTCTGACATCGACAATGTTATCACGGAAGCAGCCACACTCTACCATTTGTCTCACGAGAATGTGATCGCCATCGAAGGAGCTGACCGGTACGCAAGCAATGACGGTGTCCATATGTTAATCTTGACCGAATACTGTGATGGTGGAAACCTAAACGAGCGACTCCGACGACGAAGTAGTGCACATCAAAATTATCTTTGGATGACGCAAATGGCTGACGCTCTTTCTTACCTTCATGACAAAGGGGTTGTTCATCGCGATTTAAAACCTGACAACGTGCTTTTGACGGCAGACGAAGAGGTAAAGTTGGCCGACTTTGGTTTGGCTCGAGAGTTCACTGCCCTAAAAACTATGTATCACCTTGAAGATGATTCATGGCTGAGTTACTACACGCAGTACTACATGAACACTGAATGTGGAACCCCATACTGGATGGCTCCAGAAGTGTTTACTGGCCATTACACCGAAAAGGCAGATGTGTTCTCGCTTGGTGTTATATTTTTTGCTATTCTTGAGCGAACTTACATCACCCTCAACGGAAAACGATTTTACGGTGCATTTAAGGAAAAAGTTGGCTTAGGATTTGCCATGGCAAAGAATCCACATGCGGCTATCAATTTTTCAAGACCGGCGGAAAATTTTACCAAACAAAAGATGCAAGAGTTGACCCTTCGTTGCTTGGAGTACGAAGACGATGATCGACCCAGCGCTGCTGCGGTTCACGATGAGCTCCGAGAAAGCGACGAAgaagacgaagaagaagacgatgacgaagacgatgacgaagacgacgaggacgaagccgaagacAAACAAAACCAATGCACAATTTCTTAA

Transcript

amic_s0002.g48.t1

TTGACTTGGTAATCGTTGTCTTCCACGTGCTGAAGTTTCGTAACGCTCGAATAACGGAGGAGATAGGAAGTGATTTAGAAATTCTCGGAATGGACTGAAGCTGCATATGCAAGCGTTTTCCTGGAAGTCATGTTCCGTTAGAAAGGAGCAAACATTATGTGGCGCACATCGAGATTAACGCATGTACACTGAATTTGCGTTTGGAATCGTCGACTTAATGGCGGGTCTACCGAACACGATTAGAGTTGGACAACAAAGGCTGAGAATCCTCCAGCACCTTGGCAGTGGAGCTTTTGGAGATGTCTATAAAGTGAAAGACAGAGCTTCCTCCAGAGTTTATGCTTTAAAAGACATCTTATGCACAGACGCTTCTGACATCGACAACGTCGTTAGGGAAGCAGCCACACTCTACCAGTTGTCTCACGAGAATGTGATCACCATCGAAGGCGCTTACCCGTTTGCAAGCCTTGACGATGTCCATATGTTAATCTTGACCGGATACTGCGGTGGTGGAAACCTAAACGAGCGACTCCGACGAAGAAGTAGTGAAGATCAAAATTCTCTTTGGATGATGCAAATGGCTGACGCTCTTTCTTACCTTCATGACAAAGGGGTTGTTCATCGCGATTTAAAACCTGAAAACGTGCTTTTGACGGCATACGAAGAGGTAAAGTTGGCCGACTTTGGTTTGGCTCGAGAGTTCACAGCCCTAAAAACTATGTATCAGCTTGAAGATGATCCAGACTCATGGCTGAGTCACTACACACAATACTACATGAACACTCGCTGTGGAACCCTACACTGGATGGCCCCAGAAGTCTTCACTCGTCATTACACCGAAAAGGCAGATGTGTTCTCGCTTGGTGCTATATTTTTCGCTATTCTTGAGCGAACTTATATCACCCTCAACGGAAAACGATTTTACGGTGCATTTAAGAGAATTCGTCGTGGTCGTTCGCAGAACAGAGTTGGCTTGGGATATGCCATGGCAAACAATCCAAATACGACCATCATATTTTCAAGACTGGCGGAAAATTCTTCCCTACAAAAGATGCAAGAGCTAACCTTTCGTTGCTTGCAGTACGAAGAGGATGATCGACCTAGCGCCGCTGCGGTTTACGATGAGCTCCTAGCAAGGgacgaacgagaagacgaagaagaagaagaagacgaagacgacgaagaagaagacgaagacgaagacgaagatgcagacgaagacgacgaccggccgacgagtttcacacctgcgttacatgttacggacaactacgcatgcggactaagaccaagcaaacaaacTCGTACACGTATCAGATCGAAAGCTGCATATTATAGCACGTGCACTGAACTTACGATTGAAACCATCGACTTAATGGCGAGTCTAGATCTGTCGAACACGGTTAGAGTAGAAGACAAAAGGCTTAGAGTGCTTCAGCATCTTGGCAGTGGAGCATTCGGAGATGTCTACAAAGTCCAAGACAAAGCTTCCTTCACAGTTTATGCTTTAAAAGACATCTTATGCACAGACGCTTCTGACATCGACAATGTTATCACGGAAGCAGCCACACTCTACCATTTGTCTCACGAGAATGTGATCGCCATCGAAGGAGCTGACCGGTACGCAAGCAATGACGGTGTCCATATGTTAATCTTGACCGAATACTGTGATGGTGGAAACCTAAACGAGCGACTCCGACGACGAAGTAGTGCACATCAAAATTATCTTTGGATGACGCAAATGGCTGACGCTCTTTCTTACCTTCATGACAAAGGGGTTGTTCATCGCGATTTAAAACCTGACAACGTGCTTTTGACGGCAGACGAAGAGGTAAAGTTGGCCGACTTTGGTTTGGCTCGAGAGTTCACTGCCCTAAAAACTATGTATCACCTTGAAGATGATTCATGGCTGAGTTACTACACGCAGTACTACATGAACACTGAATGTGGAACCCCATACTGGATGGCTCCAGAAGTGTTTACTGGCCATTACACCGAAAAGGCAGATGTGTTCTCGCTTGGTGTTATATTTTTTGCTATTCTTGAGCGAACTTACATCACCCTCAACGGAAAACGATTTTACGGTGCATTTAAGGAAAAAGTTGGCTTAGGATTTGCCATGGCAAAGAATCCACATGCGGCTATCAATTTTTCAAGACCGGCGGAAAATTTTACCAAACAAAAGATGCAAGAGTTGACCCTTCGTTGCTTGGAGTACGAAGACGATGATCGACCCAGCGCTGCTGCGGTTCACGATGAGCTCCGAGAAAGCGACGAAgaagacgaagaagaagacgatgacgaagacgatgacgaagacgacgaggacgaagccgaagacAAACAAAACCAATGCACAATTTCTTAAATAAAGACCTGAAAATAAGATTTACAAAACAAAGATAACATAGCGAGGATACCTAGATGAAACCACGAATCTAATGTAAAGTTACGAAAGTCTGACATTAAACAAGTTTAGATGGTCAAAGCTTCCACCATTAAATGGGAACAAATTTTCTGCAACGAAGTACAATTTTGTGGGGACAATTTTATCTATCACGGGTCTGTGTATAAAAACTGAACGCTCTCACCATGGGTCCGACTAAGATTGTGAGATCGTCTTATCAGCTCACTGCAAGGGCACCTCTCTCTCTCTCACCATATTCATAAAACAAAATGCCAGAAAAAGAGTATTTCCCCTGCCTCCTGGACGCAGCTTCAGTTTTGGGATTCCTGCACGTGATATCAAAAATGTTCTTGATTAGCCACCTGTTATTTGGATGCCACAAACCGAAACCGGTTCAATCCAAACAGAAATTCTTACACTAAAATAATGGCGCTGAAACCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NU47	Serine/threonine-protein kinase pdik1l-A OS=Xenopus laevis OX=8355 GN=pdik1-a PE=2 SV=1
Q6NU98	Serine/threonine-protein kinase pdik1l-B OS=Xenopus laevis OX=8355 GN=pdik1-b PE=2 SV=1
Q8N165	Serine/threonine-protein kinase PDIK1L OS=Homo sapiens OX=9606 GN=PDIK1L PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001083 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR045269 all species →	Family	Serine/threonine-protein kinase Atg1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24348 all species →	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005776 all species →	Cellular Component	autophagosome	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0010506 all species →	Biological Process	regulation of autophagy	Interproscan
GO:0010508 all species →	Biological Process	positive regulation of autophagy	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0034045 all species →	Cellular Component	phagophore assembly site membrane	Interproscan
GO:0034727 all species →	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:0042594 all species →	Biological Process	response to starvation	Interproscan
GO:0044805 all species →	Biological Process	obsolete late nucleophagy	Interproscan
GO:0046777 all species →	Biological Process	protein autophosphorylation	Interproscan
GO:0048675 all species →	Biological Process	axon extension	Interproscan
GO:0061709 all species →	Biological Process	reticulophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0002.g48.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.