Gene detail

Detailed information of amic_s0002.g68.t1 in Acropora microphthalma

Genomic Location: sc0000002_pilon:806608...819336
NR annotation: XP_029204689.1, protein CBFA2T3-like isoform X5 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0002.g68.t1

CATCGGTGACGTCACTAATTAATTGCTGCTTTGGTGGTGGCCATTACTCACGGGAGCCATACTGGGTTCCAAGGGCCTTCTGTACGTAACGACTTGGTAATGCCGGCGGTAACTTCAGCGAGGATCGAATCAGCGGTGATATTGTAGCTTATTTCAGTTGGAGTGTTTTGCCTTGAAATCGGTGTCACAGTGGCCAAATTCAACTCAGATTTAAGAGAGGCAAGCATGCCTGATTCACCTACAGATCCAGCAGCTCATCCTCCTCAAGGAGTACCAGTATCCTCGCCAAATGCTAACCCTGCGTCTGTACCTGTGGTAGCTGACGTCAGGTCTCTGTCCAACAATTCATCATCACCAGCTGTTAATGGTGTCCATACAAGTCCTACTGGACCTGTCTCTCCTACTAGCATTGGAAACAGTGTGACACAGCTTCCCCCTGCTTGTGGGGCGCGACAGCTGAGCAAGTTAAAGCGCTTTCTTACTACGCTGCAACAGTTTGGTTCTGACATTTCCCCAGAAATTGGAGAAAGGGTTAGAGGACTTGTCATGAATCTTGTGAACTCGACCATATCTATAGAGGAATTTCATGCTCAACTTCAAGAGGCTACTAACTTTCCTCTCAGACCATTCGTTATACCTTTCCTGAAGGCAAATTTGCCGTTATTACAAAGAGAACTACTTCAATGTGCACAAATGGCAAAACAAACTCCACCGCAATATCTTCGGCAACATGAAGATATTTTAAGTGAGCGAGATGCAGCACCTTTAGACCCTGAGGAGATGAATCCATTGGAGATTAACGAGAATGGAAAGCGTAAGGCACCTTCTGAAAGCTTAAGACCAAAAGAAAATGGTGCCCCCCCTGACCTAGCCATGCAAATGATGGCAGAGCTGGGAAAACCTATACCTAAGAGACCTTTTCTAGGAAACAGTGGTGGACTAAATAAACCAAGTCAGTTAAGAATGGAGGATATTACTATGCCACAAGCAGGCAGCTCACGTGATGGGGATGCTAACCTGCCAGATGCTTTCCTTGACAATAAGCACGAAATTGTGGATGACTGGAGGCATGTGGATACAATGTTACAGTGCATTATTGGAATGGTTGACAAGACCAAGCGGGCTGTGTCAGTTCTTCAAACACGTTGTAATCAGGATCGGGAAGATCTTTTGGCCTGGGCAAGGAAAACAGCAGAAGAAACGGAAGCAGAAGTGAAGAGACGTGCAGGTGAATTAATGGCGAAGACGCTCAAACAAACAGAGGATCGTGTGGCTGAAGTTAAACGTCGTGCTGAAGAAGCTGTCAGCGATGTCAAAAGACAGGCTGTGGTCGAGCTCCAAAAAGCTGTCCGTGCAGCAGAGGAGAAAGCAAACGAAGCAGTGGCTAGTGCTCACGGGAAAATGGAGAAGGCTGTTCTTGAGGCACGAAGGCAAGCCACAGAAGATACGTTAGCAATGTCCAACCATCAAAGTGATTCTAGTGAGAGTTGTTGGAATTGCGGTCGAAAGGCCACTGAAACATGTAGTGGCTGCAATGTTGCCCGATATTGTGGTCCATTTTGTCAGCACAAAGACTGGGAAAATCACCATCACGTTTGTGGACAGCAAGCACAGGCCAACCATCAAGATAATTCGCAGGGAGGGGGCCCTCCAACATCAGTGTCAACCAAGGAACCAGGAACAACAACCAGCCCTGCAGTATCGAGAATGACCACCCCCACTTCATCTGCTGACCCTATATCATCACTCAGTGATTATGTCATGAAGTCAACTTCTACGTAGAAAATAATATTGCTCGTAGGTAATAGTAATATAATATTGCTTGTAGGTAAAACATCATAAGTTTGTGTGTGGACATGGGGAATATCTTGTATGGATCCCTGTTCAATTTTAGACTTAAAAATTTAGATGAATTAGCGAAGTTTTACAAGCATATTAGCAAGGTAATTAGGTCTCTTGCTGTCATGTGATGAAAAAAGTGGAGAGTGGTACAGACCTGATAACCCAACATGGCCTGCTCTGCGCGTAATTATTTGCACAATTTGGTTAGACTTTCGTTTGTCTTTGCTGTCAACTTATCTGTTTATCTGGTGTTTGTGAACCCACATCCTGATCATTCTAATAATGAGAAAATCATAAAATTAAACAACAGATGCAACAGCATGATTCCTTGTTTTCCAGTTTTCTTGAATTAGCAAGAGTGTACAAAACAAATGAAGCTTGGGTGAGGTGGAACAATTTCAATCACTACTTGTGGATGCAATAattattattattattattattattattattattaGGGGATTAGACTGTGCTATAGTGGTGTATTCAAGAGGTGAAAAAGTGTCACATTCTCCCTTTTGACTGTTAAGTGATGTGTATTGCAAGTCCCTTTTTTCAAGGCCAAAATCATGTACTATGAATGCTAAGCAGAAATTAAATGACAGTTTTGGTGGTTGCTGATTGCTAATCATACTCCAGGTTGCTGTTAAAATTTATGGTCTGTCTGGTGTTTCCTTGGAAAACAGAGGAAATGAAATTTCAAAGAGCACAACATCTTTGTTAATGCTATCCCAAGAAGCAGTAACTGTTGCAAGTATCTTGTTGTGGTGTATGTGACATGGTCTTTTGTAAGCTGGACTTGGATTATGCCATCCACTGAGTGAAATGCTATCTAGTAGACACCATCAAAGCTTATTCAGTTTTCCATTGGATAGTGAGATATTGTATGTATTCTGTGTATTGATATGCACCCAGTGAACAAATGATGCCTTGTTAGAAGTGCATGTAGACTCCTTGCATGAACTGCATTGGTATGCACGATAGATAGCAGTGCTTAAACATCTAACCATGGCTTGTGTGCTATTGGAGATCTAATTAACTGAGACAATCTATGGTGGGGATGTTAACACAATTTCAAGAATTGGTTGAGTCATTTTGCCAGCAGGTAGGTCACTACAAATATAAAAGTAGTTGTGACAGTTCTTTAAGTTATGAGGTTGAGTTGTTCAGACGGATCAAGGATGGATTGTGTAGCCTAAAACAATTATAGTAAAAACAGAATTTGCCTCTACTTTTATATTAACTGATTCATGTTATGCAGATCTGATCAACAGTGCGGTATTGGCACAATAATGTATTTTTGCTTCTATGGGGGTAAAAATCAAAATCATGCGAAACTGTGAAGCTTCAATGTTTGTACATTCTAAAACTCTCGATATACTACAGGCAGCTCAAATTCAATATTACAATTTGTATATCAAACAACTTTTGGGGGTTATATATTGGACATCTTGAAATGGATCAGAGTTATATCAGATTGAAAACACCAAAACAAGAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75081	Protein CBFA2T3 OS=Homo sapiens OX=9606 GN=CBFA2T3 PE=1 SV=2
O54972	Protein CBFA2T3 OS=Mus musculus OX=10090 GN=Cbfa2t3 PE=1 SV=2
Q61909	Protein CBFA2T1 OS=Mus musculus OX=10090 GN=Runx1t1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002462 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08788 all species →	NHR2	NHR2 domain like	Domain	Interproscan
PF01753 all species →	zf-MYND	MYND finger	Domain	Interproscan
PF07531 all species →	TAFH	NHR1 homology to TAF	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR013289 all species →	Family	CBFA2T family	Interproscan
IPR037249 all species →	Homologous_superfamily	TAFH/NHR1 domain superfamily	Interproscan
IPR014896 all species →	Domain	NHR2-like	Interproscan
IPR003894 all species →	Domain	TAFH/NHR1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10379 all species →	MTG8 ETO EIGHT TWENTY ONE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10053	RUNX1T1, CBFA2T1; CBFA2/RNUX1 translocation partner 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.