Gene detail

Detailed information of amic_s0003.g11.t2 in Acropora microphthalma

Genomic Location: sc0000003_pilon:302046...332015
NR annotation: XP_029202705.2, ribosomal protein S6 kinase-like 1 isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0003.g11.t2

ATGGAGTGCAACGATGACCAGTGGATCAGGTTGTTCAATGTATCGGATCCTCGGAGAGCCTATGCTGGGCACACTCTGTACAAAGTCACATCTAAGCTTTTTCAGAGAGAATATCCTGAAGGATCGACTGAGGTAGCAGTTTGGCGAAGATTCAGTGACTTCAAGAAACTTCATCAAGAACTGCTTAAGATCTATGTTCATAAACATTTCAAGGATGAAGAATTCCCTCGATTTCCGAAAGCTAAATTCTTTGGTCGTTTTGAAGATGGGGTGATTGAAGAAAGAAGGAAAGCTGCTTTAGACCTTTTGAACTTTGCTGGGAACATCCCAGACCTTTTCACGAGCCAACCATTTGTAAAATTCTTTGAGGGAGGATTTCCTGATAGTCCAAATTCCAATGACATTGTTGTGAGCAGAGACAGGACTTTATCAGAAGCAGAAGGTGGCATTGCCCAAGGAGCTAAAAATTATAGCATTGACAATCACAAATTCAGTGATGATGGTGTTCACAATGCTAATTCTGATGATGTGAATCTTGGCGGTGTGTGGCTCCACAAGCAGCCCTCTGTTACTGAAGGTCTTGATAACCTTAGTTCAGATGAAGAAGATGACAGCTACCAAGTGGATTTAGAAAGGAGAGAGTCTAATCAAGAGGCGAATCTCAATTCTGTAGAAGAACATGATGATGTTTTTGTCAACATCAATGAAGACTTTTCAGAACATGAATCTAAAATTTCAGATAGGGAGGATAATAGATGCGATGTTGAGCCTCCTAAATGGCTTGTACGAGCCATTTCGATATGTAGTGAAGGAGAAGATTTGGAAGCTCTTGCCTCTGAAGCAGACGAATTTTGTTTTCCTGAAGCATTTTCTGATAATGATCACGGTGAAGGAATTCATCAGGGCAAGACACAAGTGGATTCTCCAGATGGCAAAAATCATTCAAAACCTTCTGGTTTAGGAAATTCCTTTAGCTTTGGCAACCAAAGTAATCCAACTATTGTCAGAGACAATCAGACATTGGACCAAGACAACAATAGATTATTGAATCAAGAACTGTCAGCTGTAAAACCTGAACATGCTGTATCAAAGGCAGGTGTTGTTTTTGAAGACTCAGTTTTGGATGCCAATGTTGTTAGTCACAGCCAATCAAGTTTCACCAGTTCAAGTGATTCTGCAAAAGTCATAACCCACCAAAAGACAATCTATGATCTTGGAAATATACTCATTGATCCTAAAGAAAGTGATTACTTGTATGCAGCAGGACACACCATTCATCAGGCACTGGATTATGAGGTTAATGGGAAATATGAGGAGGCTTTCAGCTTGTACAGAAGTTGCGTTGGCTTGCTGTTAAGTGGTGTTCAAGAAAAGGATGCAAAGAGACGAGAAGCTGTTAGGCGTAAGACAGCTCAGTATCTATTAAAAGCTGAAGCCCTTTATAATACTTATCTCACTTCCAAAGAATCGTCAGCAAAATCTGAGCAGGGTACTTTATTGTCACATCCTGGTAGAAGTATTTGTGAATCAGATGATCTTCAAAAGTGCAAGGAGCTCACCCTTGGAGACTTAAAAGTCATTGGAATCGTTGGAAAGGTCATGTTGGTTCAGAAAATCCACAGTGGGGAGACATACGTTGTAAAGGCAATGAGTAAGTCAGGACCATTACGTATGTATGCCCATTCTCATGGAAACAAGAGTCAAAGGAAGATGTCTGTGAGACATTTATATGCGAAATACCCTAATATTGTGCAGCTATACAGATTCTTTGAGACTGCAGACACCATATACCTCTTATTGGAGTATGCACAAGGTGGCCAACTATGGGATTATATATCCTACTATCACAGTCACAAGGAGTCATTTGATTTTCATACAGGAAAACCCAATCAAATAAATGAAATAGATGGAAGCAAACTTAAGAATGATCTCAGCGTTAATGACTGTAAAACATATGAGAATGGACTTACACAAGGAGATTTATCTGAAGAAGATAAACCTTTATTAAGCAAAACCCGCATTTCATCCCCGAAATTCAGCAATCAAGCAGATGAGGACTGTTTTACAAATTTGTCTGGCTTTGTTGAACAAGAGAAGTGTACAACTATTGATGCAGTTCAAAGCATCTCAGGCATTGAGTCAATGGTAGATGGAGGAGGAGCATCTGAGATAAACAAGACGTCTGTGCAGGAAAAATTTAGTGAAAATGTTTCTGGAGTTTCTCCAAACGGCCAGTGTTTCATATTTAAGAAGCTGGACGAGTATTTTGAGTTATCCACGCATCATTTACCAAATGAATATGTCAAAATTTGGGCTGCAGAACTTGTGTTGGCTGTTGCCTACTTACATACGGCAGGGATCATTTGCAGAGACTTGAATCCAAAAAACATACTTCTGGATGGGGAAGGCCATGTTCTTCTCACATATTTTGGATCATGGGAGGCCACAGAGCATGTTCCTGATGAAGAGGCCATGAATCACTTCTACTGTGCTCCAGAAATTTCACAGATAGGTGAAGTTACAGCAGCAGCTGATTGGTGGAGTGTGGGGGCCCTCCTGTATGAAATTATAACAGAGCAGGGACTTTCAGTTACACATCCATGGGGACTGCACAATCACACAGAGCTACAACTGCCTAATAAGATTCCACCCGAGTCTAAGTCTCTTCTAAAAGAGCTGTTGAGAGTGATACCTTCTGAAAGATTAGGTTCTGGTGTTAATGGCATTGAAGAAATCAAAGCACATCCCTTTTTTAATGGAATTAGCTGGGCCTGGCTATGTTCAAGAGTCAATTAG

Transcript

amic_s0003.g11.t2

GCTATTGAAAATCATGAAAACCGCTGATGAGGCTTTGGCCGAGGAGGTAATGTCGTGCTTTTCGTAGTCGATCCCTTCCTTGCTTTCCTAAACATGCGATCAAAAAGATGGCGGACCTGTTCTAACGGAACAGCTGTCTGAGTGGTGGAATGGAGTGCAACGATGACCAGTGGATCAGGTTGTTCAATGTATCGGATCCTCGGAGAGCCTATGCTGGGCACACTCTGTACAAAGTCACATCTAAGCTTTTTCAGAGAGAATATCCTGAAGGATCGACTGAGGTAGCAGTTTGGCGAAGATTCAGTGACTTCAAGAAACTTCATCAAGAACTGCTTAAGATCTATGTTCATAAACATTTCAAGGATGAAGAATTCCCTCGATTTCCGAAAGCTAAATTCTTTGGTCGTTTTGAAGATGGGGTGATTGAAGAAAGAAGGAAAGCTGCTTTAGACCTTTTGAACTTTGCTGGGAACATCCCAGACCTTTTCACGAGCCAACCATTTGTAAAATTCTTTGAGGGAGGATTTCCTGATAGTCCAAATTCCAATGACATTGTTGTGAGCAGAGACAGGACTTTATCAGAAGCAGAAGGTGGCATTGCCCAAGGAGCTAAAAATTATAGCATTGACAATCACAAATTCAGTGATGATGGTGTTCACAATGCTAATTCTGATGATGTGAATCTTGGCGGTGTGTGGCTCCACAAGCAGCCCTCTGTTACTGAAGGTCTTGATAACCTTAGTTCAGATGAAGAAGATGACAGCTACCAAGTGGATTTAGAAAGGAGAGAGTCTAATCAAGAGGCGAATCTCAATTCTGTAGAAGAACATGATGATGTTTTTGTCAACATCAATGAAGACTTTTCAGAACATGAATCTAAAATTTCAGATAGGGAGGATAATAGATGCGATGTTGAGCCTCCTAAATGGCTTGTACGAGCCATTTCGATATGTAGTGAAGGAGAAGATTTGGAAGCTCTTGCCTCTGAAGCAGACGAATTTTGTTTTCCTGAAGCATTTTCTGATAATGATCACGGTGAAGGAATTCATCAGGGCAAGACACAAGTGGATTCTCCAGATGGCAAAAATCATTCAAAACCTTCTGGTTTAGGAAATTCCTTTAGCTTTGGCAACCAAAGTAATCCAACTATTGTCAGAGACAATCAGACATTGGACCAAGACAACAATAGATTATTGAATCAAGAACTGTCAGCTGTAAAACCTGAACATGCTGTATCAAAGGCAGGTGTTGTTTTTGAAGACTCAGTTTTGGATGCCAATGTTGTTAGTCACAGCCAATCAAGTTTCACCAGTTCAAGTGATTCTGCAAAAGTCATAACCCACCAAAAGACAATCTATGATCTTGGAAATATACTCATTGATCCTAAAGAAAGTGATTACTTGTATGCAGCAGGACACACCATTCATCAGGCACTGGATTATGAGGTTAATGGGAAATATGAGGAGGCTTTCAGCTTGTACAGAAGTTGCGTTGGCTTGCTGTTAAGTGGTGTTCAAGAAAAGGATGCAAAGAGACGAGAAGCTGTTAGGCGTAAGACAGCTCAGTATCTATTAAAAGCTGAAGCCCTTTATAATACTTATCTCACTTCCAAAGAATCGTCAGCAAAATCTGAGCAGGGTACTTTATTGTCACATCCTGGTAGAAGTATTTGTGAATCAGATGATCTTCAAAAGTGCAAGGAGCTCACCCTTGGAGACTTAAAAGTCATTGGAATCGTTGGAAAGGTCATGTTGGTTCAGAAAATCCACAGTGGGGAGACATACGTTGTAAAGGCAATGAGTAAGTCAGGACCATTACGTATGTATGCCCATTCTCATGGAAACAAGAGTCAAAGGAAGATGTCTGTGAGACATTTATATGCGAAATACCCTAATATTGTGCAGCTATACAGATTCTTTGAGACTGCAGACACCATATACCTCTTATTGGAGTATGCACAAGGTGGCCAACTATGGGATTATATATCCTACTATCACAGTCACAAGGAGTCATTTGATTTTCATACAGGAAAACCCAATCAAATAAATGAAATAGATGGAAGCAAACTTAAGAATGATCTCAGCGTTAATGACTGTAAAACATATGAGAATGGACTTACACAAGGAGATTTATCTGAAGAAGATAAACCTTTATTAAGCAAAACCCGCATTTCATCCCCGAAATTCAGCAATCAAGCAGATGAGGACTGTTTTACAAATTTGTCTGGCTTTGTTGAACAAGAGAAGTGTACAACTATTGATGCAGTTCAAAGCATCTCAGGCATTGAGTCAATGGTAGATGGAGGAGGAGCATCTGAGATAAACAAGACGTCTGTGCAGGAAAAATTTAGTGAAAATGTTTCTGGAGTTTCTCCAAACGGCCAGTGTTTCATATTTAAGAAGCTGGACGAGTATTTTGAGTTATCCACGCATCATTTACCAAATGAATATGTCAAAATTTGGGCTGCAGAACTTGTGTTGGCTGTTGCCTACTTACATACGGCAGGGATCATTTGCAGAGACTTGAATCCAAAAAACATACTTCTGGATGGGGAAGGCCATGTTCTTCTCACATATTTTGGATCATGGGAGGCCACAGAGCATGTTCCTGATGAAGAGGCCATGAATCACTTCTACTGTGCTCCAGAAATTTCACAGATAGGTGAAGTTACAGCAGCAGCTGATTGGTGGAGTGTGGGGGCCCTCCTGTATGAAATTATAACAGAGCAGGGACTTTCAGTTACACATCCATGGGGACTGCACAATCACACAGAGCTACAACTGCCTAATAAGATTCCACCCGAGTCTAAGTCTCTTCTAAAAGAGCTGTTGAGAGTGATACCTTCTGAAAGATTAGGTTCTGGTGTTAATGGCATTGAAGAAATCAAAGCACATCCCTTTTTTAATGGAATTAGCTGGGCCTGGCTATGTTCAAGAGTCAATTAGAGGAGAGAAATGTGCCCAACAGAGAGACTTGTGTTTTTTTATCGTTTTGACTTTTGTTGCTCCTTAGAACATTGAGCATGACATCAAATAAGTCAGCCTTTATAAGAAAAGAATCCAAGTAAAAAAAGCGGTGGTCAATGTTCCTATTTATTCTTCAGAAATTTCACTAATTTGGTCGCATTTACTCTTTGTTACAAAATTGTCTACTGAACATGAGTGCTTGTCAGTGCTGGAGCGGGTGTCTGGAAAACTAAGACCTCAGATCCTTTTAATTTTAGTTCTCACGGCAATTCCCGGGTCGTTTTTCAAAAAGGCACAAAAATACACTAAATAGATGCGAAGGAAATCAGTAATAAATCACGCGAAAAGCACTCCATAGAAAGGAAAGGCACAAAAGATGTAGTATATTTCCCGGAAGGAATATTACATATTAAAAAAAATTAAATTCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R2S1	Ribosomal protein S6 kinase-like 1 OS=Mus musculus OX=10090 GN=Rps6kl1 PE=1 SV=1
Q96S38	Ribosomal protein S6 kinase delta-1 OS=Homo sapiens OX=9606 GN=RPS6KC1 PE=1 SV=2
Q8BLK9	Ribosomal protein S6 kinase delta-1 OS=Mus musculus OX=10090 GN=Rps6kc1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004727 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF04212 all species →	MIT	MIT (microtubule interacting and transport) domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR007330 all species →	Domain	MIT domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR036181 all species →	Homologous_superfamily	MIT domain superfamily	Interproscan
IPR051866 all species →	Family	Intracellular Signaling and Trafficking Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15508 all species →	RIBOSOMAL PROTEIN S6 KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20839	RSKL; ribosomal protein S6 kinase-like	-	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.