Gene detail

Detailed information of amic_s0003.g119.t1 in Acropora microphthalma

Genomic Location: sc0000003_pilon:2457278...2487891
NR annotation: XP_029206723.2, protein diaphanous homolog 2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0003.g119.t1

ATGGGGGATAGACCCAATTCAAACAAGGAAGGCGGCGGCATCCTCAATCGCATAACATCGATGCGGAAAGAGAAGAAGAAAAGAGATAAAGATATAAATGGGCAGAAGGTGAAGGAGAGATTAAAGAGCATGCAAGAAGAACCAATTTTGGATCAAGAAATGGAAAAGGAGATTGAAAGTATCAAGGATCTGCCTCCTGATGAATTCAATAAAATGTTTGAAAAAATGTTGGACGATATGAATTTGTCAGAAAATCTGCGAGTGCCAATTCGCAATCGAGATATGACTACAAAGGTGGACATGTTATGCAGCTTCAAAAGGAGGCAGCTGGTATCGCAAgagagacaaAAAACATCTCAGGATGGTCTGACATCGCCAGATGATTACGTGCGAGAATTAAGGAGGACAGAAGTATCGGCTGAGCATCTTTTGAAGTCTCTTCAATCTGTGAGGGTCTCTCTCACAGGACGACCACTCAGCTGGATCCAAGAGTTTGGTGAAGAGGGATTGAAGTGCTTGCTAGGACATCTACGTGAAGCTTGTGAAAAGACTGGACATGTGGAAAAGAGGATACAACATGAATGTGTTAGGTGCTTGAAAGCTTTCATGAACAACAAGTATGGTCTGAACATGGTGCTTAAAAGTGAGGATGGGCTGCTCTTGATGGCACGGTCTATGGATCCTGATTATACTAATATGATGGCTGATGTGGTCAAGGTCATGGCTGCTGTCTGCCTTGTTAAGCATGACAAGGCTCTTGAAGCAATCACTGAGTGTGGAGAAGTTGAAAACAGAGGAAGGTTCAGCAAAATAGTGGATGCTCTGAATGATGACCATACCACTCTTAAGGTGGCGTGCATTCAGCTGATAAATGCTCTCGTTGCCACACCCGATGACTTGGATTTTAGATTGCATCTTAGAAATGAATTTATAAGAGAAGGCATGTCAGAGCCTTTCCAGGAACTTAGAAATCTGGAAAATGATGACCTCAATGTCCAATTGGACATTTTTGAAGAACACAGAGAGGATGACTCAGTTGAGTTCCAGCACAGATGGAAAGATATCACAATTAATTTTGAGGATCCCAATGAGATCTATCAGATATTAGTAAACGTTGTACAGGATACGCCATCAGAGGGAATGTTTCTGTCTATCCTACAGCACTTGTTACTCATTCGAGATGATGTTTACGCTAGGCCACAATATTATAAATTAATTGAAGAGTGCATCTCACAGATTGTACTCCACCGCAGTGGAGTTGATCCTGACTTCTCAACAAAAAGATTTCAAATTGATGTAGATCCTCTCATTGAGGACCTTGCGAAAGAAGCTCAATACCAAGAGGCGGCTGATAAATCTGTTCAGCTTGAAACCAAGCTTGAACTTGAAACAACAATGCGACAAGAGTGTGAAGCCAAGCTAACCCTAACGTCTTCTAATTATGAAATTAAAGTCGCAAGTCTAGAGAAAGAAGTGGAAGACTTGCGTGAAAAGGTCAAGAACGGAGGAGCTGTTGCTGCAGGTGGTTCTGTACCGCCCCCAGCTCCATTCCCTTCAGGTGGacccccaccaccaccaccacctccaccaccaggcccagggggaggacctccacccccaccccctcctcctccaccaGGTCCTGGTGGTGGAcctccgcctcctcccccgccaccgtttcctggtggtggtcctcctccgcctccacccccacctGGCGGTGGACCTCCTCCACCTCCACCCCCACCAGGCGGTGGACCTCCTCCACCACCTTTCCCCGGCATGGGACCACGCCCACCATTTGGGTCACCAATGATGCCTGTTCTTCCGCCGGGAGTGCTTCCAAAGAAGAAATATAAACATGAAATACAAACCAAGAGAGCAAACTGGAACAAGATCAACATGAAGAATTTGACAGAAAATACATTCTGGGCAAAAGCAAAAGAAGATAAATTGGAAAAACCTGGTTTCTTTGATCAGCTGCAACAGGCCTTTGCTGCAAAAAGCTTAGCTTCGAAAAAGACAGAGGGTGGCGACAGTTTGGAGAAAAAAACTGCTAACAAGAAAAAGAGCAAAGATTTGAGGATAATTGATCCAAAGAGCGCTCAAAACTTAGCTATTTTCCTCAGCTCACTTAAACTTCCGCATCACGAGGTTAAGAGACTGATTCTCAACTGCGATCAAACGGTTTTGACAGAAAGCGCCATCAACTCCCTTTTGAAGTACCTTCCATCACCGGAACAGCTAAGTGGCATAAAAAAGCTCGAACAAAGATTAAATATGATCCTGTTTAAGATCAAGTTACCAGAGGAGATGCAAGATACCAAACCAAATGTTGTGAACGCAACTGCGGCGTGTCGAGAAGTGAAAACTAGTCCCAGGTTCTCCAAATTCCTGGAACTTGTCCTGTTGACGGGAAACTACATGAACGCTGGATCGAGGAACGAAGGCTCGATGGGATTTGAAATGAATTACCTAACCAAGCTCAATTCGACAAAGTCAGTGGATGGTCAGTCGACCTTGCTGCACTTCTTGGAAGATATCATCGAGGCCAAATACCCGGAGATTGCCGGCTTCGAACTGGAGTTGACTCATGTAGAACAAGCTGCTAGAGTGTCGGATGAGATGCTCCAGAAATCTATCAACACCATGCAAGGCAACCTAAGGAAGCTTGAAAAGGAATTGGAGATATATCGGCCACTCAACGACCCCGAAGATAAATTCATTCCAGTTATGAAGAGTTTCTACAACGGCGCGAAGGACCAGATCGACGTGTTAGTTGAGATGCATAAAAACATGACCACCATGTATGTGGAGCTTGTTGAGTATTTCTGTTTGGACGTGAAGAAAACTTCCATGGAGGAGTTCTTTGGTGATATCAAAGCGTTCCTTGATGAGTATGAGAAAGCTAAAAAAGACAATGCAAAGAAGAAAGAAAAAGAAGAAAAGGATCGAAAAGCTAAAGAAAGAGCGgagaaagataaagaaaggaaaaagcgcatggaatctgagaagaccaagagaaagCCCGTGCTTGACATGAATGCAGATGATGACCAGGAAGGTGTGTTGGATGGCCTGATGGAGGCTCTAAACACAGGCTCCGCCTTCAGGGATCCTTCAAGACCCATGCGAAAGAAGGCGCCTGGAGGAAAGAAAGCTCGACCCGTCGACCTGATGCGCTCAAGAACACGCTCAAATATACCAGTCCAGAAAATAATGGAGGCACAAAACATGAACGATCTACACAACGCCGTTGATATTCCAGTGGATGACCAACCAACGGCTCCTGCAAGAGGCCGGCATCGAAGAGGCGGCGGCCACAAAACAGAGCCGCAGCATGAAGACGTGGCGCAAGATCTTTTAGAGAGACTGAAAAATTTAGCTGGTGATGTGTGA

Transcript

amic_s0003.g119.t1

CGTTACAGCATTTCATCTATTTCGTGAATTTTGTTAAAATTACTAATGTGTACATGGTTCCGGAGGAAAAAAATCTTTAGTATGTGAACACATAGAGCCTTAAGACAGTGCCTTGGTAAAAGTTTCGTTTCTTTAGCTCCAACATGGGGGATAGACCCAATTCAAACAAGGAAGGCGGCGGCATCCTCAATCGCATAACATCGATGCGGAAAGAGAAGAAGAAAAGAGATAAAGATATAAATGGGCAGAAGGTGAAGGAGAGATTAAAGAGCATGCAAGAAGAACCAATTTTGGATCAAGAAATGGAAAAGGAGATTGAAAGTATCAAGGATCTGCCTCCTGATGAATTCAATAAAATGTTTGAAAAAATGTTGGACGATATGAATTTGTCAGAAAATCTGCGAGTGCCAATTCGCAATCGAGATATGACTACAAAGGTGGACATGTTATGCAGCTTCAAAAGGAGGCAGCTGGTATCGCAAgagagacaaAAAACATCTCAGGATGGTCTGACATCGCCAGATGATTACGTGCGAGAATTAAGGAGGACAGAAGTATCGGCTGAGCATCTTTTGAAGTCTCTTCAATCTGTGAGGGTCTCTCTCACAGGACGACCACTCAGCTGGATCCAAGAGTTTGGTGAAGAGGGATTGAAGTGCTTGCTAGGACATCTACGTGAAGCTTGTGAAAAGACTGGACATGTGGAAAAGAGGATACAACATGAATGTGTTAGGTGCTTGAAAGCTTTCATGAACAACAAGTATGGTCTGAACATGGTGCTTAAAAGTGAGGATGGGCTGCTCTTGATGGCACGGTCTATGGATCCTGATTATACTAATATGATGGCTGATGTGGTCAAGGTCATGGCTGCTGTCTGCCTTGTTAAGCATGACAAGGCTCTTGAAGCAATCACTGAGTGTGGAGAAGTTGAAAACAGAGGAAGGTTCAGCAAAATAGTGGATGCTCTGAATGATGACCATACCACTCTTAAGGTGGCGTGCATTCAGCTGATAAATGCTCTCGTTGCCACACCCGATGACTTGGATTTTAGATTGCATCTTAGAAATGAATTTATAAGAGAAGGCATGTCAGAGCCTTTCCAGGAACTTAGAAATCTGGAAAATGATGACCTCAATGTCCAATTGGACATTTTTGAAGAACACAGAGAGGATGACTCAGTTGAGTTCCAGCACAGATGGAAAGATATCACAATTAATTTTGAGGATCCCAATGAGATCTATCAGATATTAGTAAACGTTGTACAGGATACGCCATCAGAGGGAATGTTTCTGTCTATCCTACAGCACTTGTTACTCATTCGAGATGATGTTTACGCTAGGCCACAATATTATAAATTAATTGAAGAGTGCATCTCACAGATTGTACTCCACCGCAGTGGAGTTGATCCTGACTTCTCAACAAAAAGATTTCAAATTGATGTAGATCCTCTCATTGAGGACCTTGCGAAAGAAGCTCAATACCAAGAGGCGGCTGATAAATCTGTTCAGCTTGAAACCAAGCTTGAACTTGAAACAACAATGCGACAAGAGTGTGAAGCCAAGCTAACCCTAACGTCTTCTAATTATGAAATTAAAGTCGCAAGTCTAGAGAAAGAAGTGGAAGACTTGCGTGAAAAGGTCAAGAACGGAGGAGCTGTTGCTGCAGGTGGTTCTGTACCGCCCCCAGCTCCATTCCCTTCAGGTGGacccccaccaccaccaccacctccaccaccaggcccagggggaggacctccacccccaccccctcctcctccaccaGGTCCTGGTGGTGGAcctccgcctcctcccccgccaccgtttcctggtggtggtcctcctccgcctccacccccacctGGCGGTGGACCTCCTCCACCTCCACCCCCACCAGGCGGTGGACCTCCTCCACCACCTTTCCCCGGCATGGGACCACGCCCACCATTTGGGTCACCAATGATGCCTGTTCTTCCGCCGGGAGTGCTTCCAAAGAAGAAATATAAACATGAAATACAAACCAAGAGAGCAAACTGGAACAAGATCAACATGAAGAATTTGACAGAAAATACATTCTGGGCAAAAGCAAAAGAAGATAAATTGGAAAAACCTGGTTTCTTTGATCAGCTGCAACAGGCCTTTGCTGCAAAAAGCTTAGCTTCGAAAAAGACAGAGGGTGGCGACAGTTTGGAGAAAAAAACTGCTAACAAGAAAAAGAGCAAAGATTTGAGGATAATTGATCCAAAGAGCGCTCAAAACTTAGCTATTTTCCTCAGCTCACTTAAACTTCCGCATCACGAGGTTAAGAGACTGATTCTCAACTGCGATCAAACGGTTTTGACAGAAAGCGCCATCAACTCCCTTTTGAAGTACCTTCCATCACCGGAACAGCTAAGTGGCATAAAAAAGCTCGAACAAAGATTAAATATGATCCTGTTTAAGATCAAGTTACCAGAGGAGATGCAAGATACCAAACCAAATGTTGTGAACGCAACTGCGGCGTGTCGAGAAGTGAAAACTAGTCCCAGGTTCTCCAAATTCCTGGAACTTGTCCTGTTGACGGGAAACTACATGAACGCTGGATCGAGGAACGAAGGCTCGATGGGATTTGAAATGAATTACCTAACCAAGCTCAATTCGACAAAGTCAGTGGATGGTCAGTCGACCTTGCTGCACTTCTTGGAAGATATCATCGAGGCCAAATACCCGGAGATTGCCGGCTTCGAACTGGAGTTGACTCATGTAGAACAAGCTGCTAGAGTGTCGGATGAGATGCTCCAGAAATCTATCAACACCATGCAAGGCAACCTAAGGAAGCTTGAAAAGGAATTGGAGATATATCGGCCACTCAACGACCCCGAAGATAAATTCATTCCAGTTATGAAGAGTTTCTACAACGGCGCGAAGGACCAGATCGACGTGTTAGTTGAGATGCATAAAAACATGACCACCATGTATGTGGAGCTTGTTGAGTATTTCTGTTTGGACGTGAAGAAAACTTCCATGGAGGAGTTCTTTGGTGATATCAAAGCGTTCCTTGATGAGTATGAGAAAGCTAAAAAAGACAATGCAAAGAAGAAAGAAAAAGAAGAAAAGGATCGAAAAGCTAAAGAAAGAGCGgagaaagataaagaaaggaaaaagcgcatggaatctgagaagaccaagagaaagCCCGTGCTTGACATGAATGCAGATGATGACCAGGAAGGTGTGTTGGATGGCCTGATGGAGGCTCTAAACACAGGCTCCGCCTTCAGGGATCCTTCAAGACCCATGCGAAAGAAGGCGCCTGGAGGAAAGAAAGCTCGACCCGTCGACCTGATGCGCTCAAGAACACGCTCAAATATACCAGTCCAGAAAATAATGGAGGCACAAAACATGAACGATCTACACAACGCCGTTGATATTCCAGTGGATGACCAACCAACGGCTCCTGCAAGAGGCCGGCATCGAAGAGGCGGCGGCCACAAAACAGAGCCGCAGCATGAAGACGTGGCGCAAGATCTTTTAGAGAGACTGAAAAATTTAGCTGGTGATGTGTGATCAGTGTTGAGTGCGTCTGTTTAAAACAACATGCGTGCGCATGGGTCATGCACGTCAGAGGTAAATGAGCTTTCatagactaaatcggcttactcattgttttacccaattgaaacgctttgggaataaaacgcttcgtttcaggaatttccatatcatgtaaataaatgtgaatgccatatcatgatgcaaatacaatacgcaaagaatcttagccccgggagatttgaattgggtacaagcttgagttggccgagtaggtctattTTTGGGAAAACTGTGGGAAGCCGGTGTGGGAAAGTTTCAGTTGGTGCTTGAAGGGCGCTTGTAAATAGCTGGTAGCAATGAAAACTACGTCTTGTTACAAACGTCTGTGGCTAGAGATGACAGACCTGACGTAGAAGCGTTAATTATggctattgatccgtggcccttgagggcgaagggtctaattgttttagtatcacccaactagtcggacagaaaaaagcaataataaattcagcagaaaaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60879	Protein diaphanous homolog 2 OS=Homo sapiens OX=9606 GN=DIAPH2 PE=1 SV=1
O70566	Protein diaphanous homolog 2 OS=Mus musculus OX=10090 GN=Diaph2 PE=1 SV=2
F1LVW7	Protein diaphanous homolog 3 OS=Rattus norvegicus OX=10116 GN=Diaph3 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002485 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02181 all species →	FH2	Formin Homology 2 Domain	Family	Interproscan
PF06371 all species →	Drf_GBD	Diaphanous GTPase-binding Domain	Repeat	Interproscan
PF06367 all species →	Drf_FH3	Diaphanous FH3 Domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042201 all species →	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan
IPR015425 all species →	Domain	Formin, FH2 domain	Interproscan
IPR014767 all species →	Domain	Diaphanous autoregulatory (DAD) domain	Interproscan
IPR010473 all species →	Domain	Formin, GTPase-binding domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR010472 all species →	Domain	Formin, FH3 domain	Interproscan
IPR051412 all species →	Family	Formin Homology Diaphanous subfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR014768 all species →	Domain	Rho GTPase-binding/formin homology 3 (GBD/FH3) domain	Interproscan
IPR044933 all species →	Homologous_superfamily	Diaphanous, GTPase-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45691 all species →	PROTEIN DIAPHANOUS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0016043 all species →	Biological Process	cellular component organization	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0003.g119.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.