Gene detail

Detailed information of amic_s0003.g154.t1 in Acropora microphthalma

Genomic Location: sc0000003_pilon:3113340...3125144
NR annotation: XP_029208332.2, V-type proton ATPase subunit S1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0003.g154.t1

ctCATTACATCATGTGATCACGTGCCTGTGCTGCACTTTCCAAAATGGCTGCTTTATGGACCTCCCTCTTTCTCTTAAGTTTCATATTATTCTTCGCTTTTGCGAAATCTGGCTCTCAGGTGCCTGTTTTTATATGGTCCAAGGATAGTGAATTAAATGGTGCTACTCCTGTTTTGGCGGGACATACAGTAGAAGGAAATGACTTTGAAGAGAAATATCTTGATAGGCTGTTTGAATCCCCTAAACTTATTTGTGTATTTATACAAGACAGGTTAAGTGTTGATGATATTAGTCGTTATGGTGATGCTTACAGCCCTGGAGACAGTGGGGCTGCTTTTTCAAACCTTAAGATTGCCATGGAAACTGCCAACTCTTCTGTTGTCCTTCCTTTGGTTGAACTAAATTCAGCTGGTGTATCTCACGAGTTAGTGAACTTGATCAAAAGAAAGACTGATGGTTTGGTCAGGGAGTTTTCACCAGAAGAACATCATGCTTTTAATATAAAAGAATTTTTATTACATCGGGAAAAGACCAATGTTTGCATCTTTCATTTGCTGCCTTCCTCAACAAGCTTACCTGAGGAGATTTTTGTGCAAAATGATAAGCTGATTGGTGCAATAGTGGAACAAATCTCTGCGTCTGGTTTGCCATATTCTTGTATTTTGACTTCTACAGCTCCAAATGTGGATGTTGAAACCAGATATGTGGCAGAAAGAAGAGCAAACATGGCTCATGACCGGCTTCGCAGAGATGTGAGACAAAATGCTTTTGATGACCGCAACATATCATCATCATCAACTGTCAATGGAAGTGTGTTTGTGGATGCTCAATGTATTCTATTGTATACAGAAGGAGTTGTTTTCACATACAATGAGAAAAAGTACAATATATTTAACATGACAGGACTGGCATACAGTTTCAGTGGAGAATGTGGGGACAAGGCTTTTGAAGATAGTGTTGTGGTGAGCTTCAAAATGGAAAATGTTAAAGCATTTAATTTGAGAATGTCCTTTTCCTTGACTTCCAATGACTCAAGTTATGAATGGCGTTGCTCTAATGCAAGTTTAGACGTTGAGGGTACATTTGAAGGGGAACACATCAAAGACATATTTCGGTACAATAATTGTGGCAAGTCATTGACAGCCCCTGCCAAATATTCCTACAGCTGTTTCAATGTGACATTGAGAAACGATAACAGTTCAATAACTTTCAAACAGTTTCAGGTCCAACCATTCAATGTACCAGGCAATGGAACCTTTTCTTATGCCTACGACTGTATTGGCTTCTTCACCATTCCGATCTTCATGGGTCTGATTACTGCCGGTGTCCTTCTTGTGATTCTGTTTTGTGGCATTTTATCTATGTTGAGTCTCACGACTATGGACAGATTTGATGATCCAAAAGGCCAGACAATACAAGTCGCTACTAGTTAATCTGCAATGTACAATATTGTTCCTGTTTGTGGCTGAATCATGATGTCAAGAAATAAGCAGATTGAGGAGATGTTACTATTAATTAATTTGAGGCCTTTGGTGAAGGCAGAAGTTTTCATTGTCTTTCTCCTGTtttgtttgtttgttttttgttCTGCTTTTGGGCATTCAAAACAAACGTATCAGTTCAACTTTCCTTGGATTTTATTATGAAAAAAAACTTTATATGGATACAGTGTAGTTTTTTGAAGTGGCTGGAAGAGAAGTGCTCTCAAACCGGTCAATTGGAAATATCCCCATAATTTGAGTGAGACTGAAATTACTGAAGGCTGAATTGGAAtaattatgttgatgtagtaatagtaattggaccgagtggagtataattcagggagtaatcgggcgagtaatttcaaatcggccgagcgcgaggccgatttgaaattacgagcccaattactccctgaattgtacgacacaaagtccaattaccagttaatcgtaacttcaacaaacaaaattcgagaagaatatgacagtggtataaactatttgacaggtttatatattcaacttctaagctacatgccggaaaaaaagccattcaagtgcaactagcgcgagctcgatgacgcgtactatccaattactcaggcatgacgcgtacaactgtacaattacggctgaaatcaggcctgctgatgaccaatcagattcgagaattttgatgtagttgtgattatAATAATCTGGATGGGTGAAGTTGTTGTCGTCGTTGATGTTGGTGGCTGACATGCTGAGAAGAAGTTACCATCAGAGGCAATTAAAGATTACTGACTTCCCACTCATCTTGACTCAAGATGACTGCGCTATGGCAACGTTAGTCCTAAACAACGATTTTTGTCTTTAATCAAATTCCATCAAGAAACCCTCTGAAATCTCCATAGCATTGTTCACTCCAtaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P40682	V-type proton ATPase subunit S1 OS=Bos taurus OX=9913 GN=ATP6AP1 PE=1 SV=1
O54715	V-type proton ATPase subunit S1 OS=Rattus norvegicus OX=10116 GN=Atp6ap1 PE=1 SV=1
Q9R1Q9	V-type proton ATPase subunit S1 OS=Mus musculus OX=10090 GN=Atp6ap1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005577 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05827 all species →	VAS1_LD	V-type proton ATPase subunit S1, luminal domain	Domain	Interproscan
PF20520 all species →	Ac45-VOA1_TM	V0 complex accessory subunit Ac45/VOA1 transmembrane domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046755 all species →	Domain	V-type proton ATPase subunit S1, luminal domain	Interproscan
IPR046756 all species →	Domain	V-type proton ATPase subunit S1/VOA1, transmembrane domain	Interproscan
IPR008388 all species →	Family	V0 complex accessory subunit Ac45	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12471 all species →	VACUOLAR ATP SYNTHASE SUBUNIT S1	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0003.g154.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03662	ATPeVS1, ATP6S1; V-type H+-transporting ATPase S1 subunit	-	Rheumatoid arthritis	ko05323	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.