Gene detail

Detailed information of amic_s0003.g73.t1 in Acropora microphthalma

Genomic Location: sc0000003_pilon:1787922...1816361
NR annotation: XP_029179724.2, E3 ubiquitin-protein ligase TRIM71-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0003.g73.t1

ATGAACGCGAGGAAAAAGGTCTTTAGAGAACCAAGAAAAACGAACCAACTCGACCAAGTCCTCTCCTCTTATTCTTCTTACATTAAGAATTCTGCTGACAACAACCCATCTCCAAATGGTGCAGTTTTGTTCTGTGTGGTCGGAGGCAAAATGAGTGAGGGTATTAACTTTTCAGATGAGCTCGGAAGATGTATTGTGATGGTGGGTCTTCCGTATCCTAACATGTATTCACCAGAGTTGAAGGAAAAAATGACGTATCTTGACTCCACATTAGGGCCCAAAGCTGGACAAAGTCATTACGAAAACCTGTGCATGAAAGCTGTTAACCAATCAATAGGTCGAGCTATTCGTCACAGAGGGGACTATGCGACGATTCTTCTGTTAGATCAACGCTACGGCTCTGCCAGAATAACGAAAAGTTTGCCTGATTGGATATCAAACAGGCTCCAACATCACACTCGCTTTGGCTCTGCATTTGCCGCCATTCGCAAGGGGCATGCACGAACAAGCGCTAGAAATGGAAAGTTTCTCTGCCCCGAATGTCAGGCAGAAACGACTCTCCCTGACGAAAATCGATTCGACAAACTACCCACAAGTTTTCATCACAATAGTTTGCTGAGTGTTCTGGGCGTCCGACAAGTCGGCGATGGAAGCGAGATCAGTTGTGGCATTTGTAAGAAGACTAGTGTGGCAATAAGTTATTGCTTCGACTGCGAGAAGTTGATGTGCAGTGACTGTAAAAACGCTCATGAATTGTTCAGGAACGCCGCCTTCCAAGGCCACAAGGTGACTCCAGTGAAGCAATTCCAAGATCAAGACTACGAAGCGTTGTTGAAGAGGCAGTCCTTCTGCTCTCACCAATACCACGAACGAGAGCCAGCAAGGTTTTACTGCACGGAATGCGAAATGTGTGTTTGTCAGATTTGCATCAAGACCATACACAAACACCACGGAGTCGAACTACTTGAGACGGCACTGGAAAGTGCGAATGAGGAAATTCAAAGGCTAGCTGAGATGACGAAAGAAAGAATCAAAACCTTTCATGCTTCAATTCGTCAGATTGAAGAAAGGGAAGCAGAGATGGAGGCAAACGTCGCTTCCTCAAAGCGTGAAGTTTCCCGAGCAGCTGATCAGATCGTGGCCAAGGCACGCGAACTTGAACGCGATAACATAACTGCCCTCGAGAACACGCGCCTTTTAAACGCGCAGAAGTTTAACTCGGCAAAGCAGCAACTACAGTCTTTCGCCAAGCAATTCACTCAAGCGGTCGATTTCGCCCAGAAGATTGTTGAAATTAATTCTTACTCAGATGTTATACAAAGTCACCAACAAATTGTCTCCCGTTTTAAAGACCTCGATAGGATTCCAATCCCACCACTTCCGGCTCGTTCATCAGCGATGTTTGTCCAAACTTGTAATCCATCGAATTTAGAGCTTGGCTTCACGACAACAGCCGATGTCGATGTAAATAAGTCTGTAGTCAACGGCCTGAATCAAGAATTTCAAGCTGGCGTAGAAGGCACACTTGTGGTTCGTCCCAGAATTCATCCAGAAGAAGGCGTGACTGAAGCCGTAAAAACCAAAATTCATGTCCAAGTGCTGATGGAACCTCTTGAAAAGGTTTGTAGTATGGATGTTTTTGATCAAGGAGACGGAAGTTATCAAGTAAAATTTGTTGCTAAGGTTCCTGGTTGTTTGAAAGTCTCGGTGAAGATCAACAACAAGGAACTTGCAAAGAGTCCCTTTACTGTCCATGTGAAGGAGCGACGTATTCAGGTCGTTGGCGAGTTAGAGTTTGTAGGAAAAGTTCCGAAAGATCCTTCAGCGATTGCCGTAAATAGTGAAGGGTTGATTGCAGTCGGTGATTATGGAGGTCATTGCATTCTGTTATATAATGCGAAAGGAGAGTATCAGAGAGAACTAGGTTCGTATGGAGAGAATGAAGGCCAATTTCACAAGCCAGCAGATATAATTTTCATCAATGATGACGAGGTTTTAGTTGCCGATGCAAGAAATCACCGCCTTCAGCAATTCAACGTCAAAACAGGAAACTTTATCAAGAGCTTTGGCAAGGAAGGAAGAGGAGCTGGAGAGTTCAATTTTCCCTGCGGTGTTTGTATGGATGATTCAGGGAATATTGTCGTAACTGATACGGGCAACGGCAGAGTCCAGGTTTTGACCGAGGATGGCGAACATTTGCTTACATTTGGTGAGAATGGCGAACTTGACCGACCAGTAAAGTGCATTTACTGGCGGAATGCTTATATTGTATCCAGTTTAAGGAATCACATCTTGAACATTTTTGACTGTGGTGGAACGCTTCTATACCAGATAGGAGAATCTGGTACTGAAAACCGACATTTGCCTAGTGAGCTGTGGAGATTTTGCATCGAGAGTTCTCGGAATCACCAGAATCTTCTCGTGAATGACGATAATGGTTGCATTTATCAGTTCACAATGGATAACTGCTGGACGGGACAAACTGTTGACAGTTTAGAAGGTGTCATATCAATAACTGCAGCTCCAGATGGGCGTATTTTAGTTGTAGGTGAGAAAGCAAAAACAGTGCTATTCTTGAAATAG

Transcript

amic_s0003.g73.t1

TTGTACAAGGTTTCAATCTTTTGGGATGGAAAAGGTACAAAAGCACATAAATGTTGAAGAAAAGAAGACAAAGAGCTGTGATTTGAAGCAATTATCTTTACATCAATCGCCGTCAATCAAACCCGCAGCTGATAAGAAGCCGGTATTTTTTCCATTTCCTTTCTCGCCATACGACATCCAGGAAGACTTCATGCACACTTTGTTTGATGTGCTCAACAATGGAGAAGTTGGAATCTTCGAGAGCCCCACTGGAACGGGCAAGTCGTTAAGTTTAATTTGTGGTGCACTGACTTGGTTGAAGAATTATGAGGAGAGAAGACAAGAAGAGTTAGAGAATGCACTGTCAAGTTCGGATAAAGATGATAATCAAAGGAACATTACAACAAAAGATGTACAAAATGACTCTGCATCAACACCAGACTGGGTCATAGAATTTGCTGAAAAACAAGCTAAGCAAGAAAAGGAAGACAGATTGAAGGAAGAAAGAGAAAGGATTGAAAAACAAAGGGCTCAAATTTACAAGCTCAAGAATGAAATAAGACCCGCTTTTGCCATTAAAGGGAAGAGAAAACATAGTGATGACAAGCTAAGTGACTTTCACATGGGAGAAGAATTATCGGAAGACAAAATTTCTGAAGAGATCAATGAGGTGTTAGGCAAAACCATTAAAAAAGATCCCGATGCGGATATTGTATTGACTGAGTATTTCAGTGAAGGAGAAGATGCAGGCTCAGACCAAGAGGAAGATAATGATAAACGCGAAGAGCCTCACTGCCTAAAGATTTACTATTGCAGTCGAACACACTCACAATTAGCTCAATTTGTGCGAGAGGTGCAAAAGAGTCCCTTTAATGAAAGCACAAGAGTGGTTTCCTTGGGATCAAGACAGAACCTCTGCATTAATGATGATGTTAAGCAACTAAAAAATATAAACAAAATTAATGACAGATGTTTAGAACTTCAGAAAAAAGACAAAGAGAAGAAAACAACATCTGATGGAGAGAAGGCTCCAAAGAGGAAAAAACTTCTGACAGGGTGTCCTTATTATTCTTACCAACAGTTGCAGAGATTTCGAGACAATGTTTTGATTGACATTAAAGATATCGAACAGCTCGTTTCTATTGGAGAAGAACTTCAGGCGTGTCCCTACTATGGCTCAAGATTAGCCATACCTGCGGCACAACTTGTTGTTTTACCTTACAACTTACTTCTTCACAAGTCTACAAGAGAAGCTTGTGGAATAAAGCTTAATGGCAATGTAGTTATCATAGACGAGGCACACAACTTAATTGACACAATCAGCAGTGTCTACAGCGTGGAGATTACGGGTTCTCAGATTTCACGTGCCCATTCTCAGCTAACACAATATCAAGATCGCTACAGGACAAGGTTAAAAGCAAAGAATTTACTCTACATCCAGCAACTCCTGTACATTCTTATCTGCTTCTTAAACTGTTTAGGGGGGAAGGAGATGCTTTCAAATTCCAAAATGCTCTCAACAGCTCCTGCTGAAAATGGTGTTCTCACTGGCCTAAGGGAACAAAGGGTACCAGCGGAAGTGAAATTAAAAACAATCAATGACTTCTTGTTTTCTGCAAAAATGGACAACGTTAACCTTTTTAAGATAAAAAAATACTGCGAGAAGAGCATGATTTCGAAGAAGCTTAATGGATTTGTCGACAAATACCAGTCTGGGCAGGTAGATACAGGGCTTAATGTGGAACAGGAATACCAGAGTAGCAGCTCACCACTGCAAATCATTGAGAGCTTTTTAGAAGCACTAACAAATGCTGACAAAGATGGAAGGGTGGTAGTAAATAGACAAGGTCGACTAAGCTGTTCCAGTCTCAAATTTCTTCTGTTAAATCCAGCTGTTCACTTTACCAACATTGTGAGAGAAGCAAGGGCAGTTGTTGTTGCTGGAGGAACAATGCAACCTATGTCAGATTTCAAAGATCAGTTATTCGCTTGTGCTGGGCTTCCTAATGAAAACATAGTAGAGTTCTCCTGTGGTCATGTTATTCCAGCAGAGCATTTATTGGCAGTAGCGCTCGATAGAGGACCATCAGGCAAAGAACTTGACTTCACATATCAATCCCGAGGCTCCACTGAATTGAAAGACGAGTTAGGCCGTCTCCTCGTCAACATTTTTGCTGTAGTTACTGGCGGAGTTGTCTGCTTTTTCTCCTCGTATGACTACGAGGACAAAGTTTATTCACACTGGCAAAAAACAGGCATTCTTGAAAGGATGAACGCGAGGAAAAAGGTCTTTAGAGAACCAAGAAAAACGAACCAACTCGACCAAGTCCTCTCCTCTTATTCTTCTTACATTAAGAATTCTGCTGACAACAACCCATCTCCAAATGGTGCAGTTTTGTTCTGTGTGGTCGGAGGCAAAATGAGTGAGGGTATTAACTTTTCAGATGAGCTCGGAAGATGTATTGTGATGGTGGGTCTTCCGTATCCTAACATGTATTCACCAGAGTTGAAGGAAAAAATGACGTATCTTGACTCCACATTAGGGCCCAAAGCTGGACAAAGTCATTACGAAAACCTGTGCATGAAAGCTGTTAACCAATCAATAGGTCGAGCTATTCGTCACAGAGGGGACTATGCGACGATTCTTCTGTTAGATCAACGCTACGGCTCTGCCAGAATAACGAAAAGTTTGCCTGATTGGATATCAAACAGGCTCCAACATCACACTCGCTTTGGCTCTGCATTTGCCGCCATTCGCAAGGGGCATGCACGAACAAGCGCTAGAAATGGAAAGTTTCTCTGCCCCGAATGTCAGGCAGAAACGACTCTCCCTGACGAAAATCGATTCGACAAACTACCCACAAGTTTTCATCACAATAGTTTGCTGAGTGTTCTGGGCGTCCGACAAGTCGGCGATGGAAGCGAGATCAGTTGTGGCATTTGTAAGAAGACTAGTGTGGCAATAAGTTATTGCTTCGACTGCGAGAAGTTGATGTGCAGTGACTGTAAAAACGCTCATGAATTGTTCAGGAACGCCGCCTTCCAAGGCCACAAGGTGACTCCAGTGAAGCAATTCCAAGATCAAGACTACGAAGCGTTGTTGAAGAGGCAGTCCTTCTGCTCTCACCAATACCACGAACGAGAGCCAGCAAGGTTTTACTGCACGGAATGCGAAATGTGTGTTTGTCAGATTTGCATCAAGACCATACACAAACACCACGGAGTCGAACTACTTGAGACGGCACTGGAAAGTGCGAATGAGGAAATTCAAAGGCTAGCTGAGATGACGAAAGAAAGAATCAAAACCTTTCATGCTTCAATTCGTCAGATTGAAGAAAGGGAAGCAGAGATGGAGGCAAACGTCGCTTCCTCAAAGCGTGAAGTTTCCCGAGCAGCTGATCAGATCGTGGCCAAGGCACGCGAACTTGAACGCGATAACATAACTGCCCTCGAGAACACGCGCCTTTTAAACGCGCAGAAGTTTAACTCGGCAAAGCAGCAACTACAGTCTTTCGCCAAGCAATTCACTCAAGCGGTCGATTTCGCCCAGAAGATTGTTGAAATTAATTCTTACTCAGATGTTATACAAAGTCACCAACAAATTGTCTCCCGTTTTAAAGACCTCGATAGGATTCCAATCCCACCACTTCCGGCTCGTTCATCAGCGATGTTTGTCCAAACTTGTAATCCATCGAATTTAGAGCTTGGCTTCACGACAACAGCCGATGTCGATGTAAATAAGTCTGTAGTCAACGGCCTGAATCAAGAATTTCAAGCTGGCGTAGAAGGCACACTTGTGGTTCGTCCCAGAATTCATCCAGAAGAAGGCGTGACTGAAGCCGTAAAAACCAAAATTCATGTCCAAGTGCTGATGGAACCTCTTGAAAAGGTTTGTAGTATGGATGTTTTTGATCAAGGAGACGGAAGTTATCAAGTAAAATTTGTTGCTAAGGTTCCTGGTTGTTTGAAAGTCTCGGTGAAGATCAACAACAAGGAACTTGCAAAGAGTCCCTTTACTGTCCATGTGAAGGAGCGACGTATTCAGGTCGTTGGCGAGTTAGAGTTTGTAGGAAAAGTTCCGAAAGATCCTTCAGCGATTGCCGTAAATAGTGAAGGGTTGATTGCAGTCGGTGATTATGGAGGTCATTGCATTCTGTTATATAATGCGAAAGGAGAGTATCAGAGAGAACTAGGTTCGTATGGAGAGAATGAAGGCCAATTTCACAAGCCAGCAGATATAATTTTCATCAATGATGACGAGGTTTTAGTTGCCGATGCAAGAAATCACCGCCTTCAGCAATTCAACGTCAAAACAGGAAACTTTATCAAGAGCTTTGGCAAGGAAGGAAGAGGAGCTGGAGAGTTCAATTTTCCCTGCGGTGTTTGTATGGATGATTCAGGGAATATTGTCGTAACTGATACGGGCAACGGCAGAGTCCAGGTTTTGACCGAGGATGGCGAACATTTGCTTACATTTGGTGAGAATGGCGAACTTGACCGACCAGTAAAGTGCATTTACTGGCGGAATGCTTATATTGTATCCAGTTTAAGGAATCACATCTTGAACATTTTTGACTGTGGTGGAACGCTTCTATACCAGATAGGAGAATCTGGTACTGAAAACCGACATTTGCCTAGTGAGCTGTGGAGATTTTGCATCGAGAGTTCTCGGAATCACCAGAATCTTCTCGTGAATGACGATAATGGTTGCATTTATCAGTTCACAATGGATAACTGCTGGACGGGACAAACTGTTGACAGTTTAGAAGGTGTCATATCAATAACTGCAGCTCCAGATGGGCGTATTTTAGTTGTAGGTGAGAAAGCAAAAACAGTGCTATTCTTGAAATAGCTTGACATAAAACTAAAAATGTGTTTTCAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1R345	ATP-dependent DNA helicase DDX11 OS=Danio rerio OX=7955 GN=ddx11 PE=2 SV=1
Q6AXC6	ATP-dependent DNA helicase DDX11 OS=Mus musculus OX=10090 GN=Ddx11 PE=1 SV=2
Q92771	Putative ATP-dependent DNA helicase DDX12 OS=Homo sapiens OX=9606 GN=DDX12P PE=5 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000277 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13307 all species →	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR006555 all species →	Domain	ATP-dependent helicase, C-terminal	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR045028 all species →	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472 all species →	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0016818 all species →	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0034085 all species →	Biological Process	establishment of sister chromatid cohesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0003.g73.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.