Gene detail

Detailed information of amic_s0003.g73.t1 in Acropora microphthalma

Genomic Location: sc0000003_pilon:1787922...1816361
NR annotation: XP_029179724.2, E3 ubiquitin-protein ligase TRIM71-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

amic_s0003.g73.t1

ATGAACGCGAGGAAAAAGGTCTTTAGAGAACCAAGAAAAACGAACCAACTCGACCAAGTCCTCTCCTCTTATTCTTCTTACATTAAGAATTCTGCTGACAACAACCCATCTCCAAATGGTGCAGTTTTGTTCTGTGTGGTCGGAGGCAAAATGAGTGAGGGTATTAACTTTTCAGATGAGCTCGGAAGATGTATTGTGATGGTGGGTCTTCCGTATCCTAACATGTATTCACCAGAGTTGAAGGAAAAAATGACGTATCTTGACTCCACATTAGGGCCCAAAGCTGGACAAAGTCATTACGAAAACCTGTGCATGAAAGCTGTTAACCAATCAATAGGTCGAGCTATTCGTCACAGAGGGGACTATGCGACGATTCTTCTGTTAGATCAACGCTACGGCTCTGCCAGAATAACGAAAAGTTTGCCTGATTGGATATCAAACAGGCTCCAACATCACACTCGCTTTGGCTCTGCATTTGCCGCCATTCGCAAGGGGCATGCACGAACAAGCGCTAGAAATGGAAAGTTTCTCTGCCCCGAATGTCAGGCAGAAACGACTCTCCCTGACGAAAATCGATTCGACAAACTACCCACAAGTTTTCATCACAATAGTTTGCTGAGTGTTCTGGGCGTCCGACAAGTCGGCGATGGAAGCGAGATCAGTTGTGGCATTTGTAAGAAGACTAGTGTGGCAATAAGTTATTGCTTCGACTGCGAGAAGTTGATGTGCAGTGACTGTAAAAACGCTCATGAATTGTTCAGGAACGCCGCCTTCCAAGGCCACAAGGTGACTCCAGTGAAGCAATTCCAAGATCAAGACTACGAAGCGTTGTTGAAGAGGCAGTCCTTCTGCTCTCACCAATACCACGAACGAGAGCCAGCAAGGTTTTACTGCACGGAATGCGAAATGTGTGTTTGTCAGATTTGCATCAAGACCATACACAAACACCACGGAGTCGAACTACTTGAGACGGCACTGGAAAGTGCGAATGAGGAAATTCAAAGGCTAGCTGAGATGACGAAAGAAAGAATCAAAACCTTTCATGCTTCAATTCGTCAGATTGAAGAAAGGGAAGCAGAGATGGAGGCAAACGTCGCTTCCTCAAAGCGTGAAGTTTCCCGAGCAGCTGATCAGATCGTGGCCAAGGCACGCGAACTTGAACGCGATAACATAACTGCCCTCGAGAACACGCGCCTTTTAAACGCGCAGAAGTTTAACTCGGCAAAGCAGCAACTACAGTCTTTCGCCAAGCAATTCACTCAAGCGGTCGATTTCGCCCAGAAGATTGTTGAAATTAATTCTTACTCAGATGTTATACAAAGTCACCAACAAATTGTCTCCCGTTTTAAAGACCTCGATAGGATTCCAATCCCACCACTTCCGGCTCGTTCATCAGCGATGTTTGTCCAAACTTGTAATCCATCGAATTTAGAGCTTGGCTTCACGACAACAGCCGATGTCGATGTAAATAAGTCTGTAGTCAACGGCCTGAATCAAGAATTTCAAGCTGGCGTAGAAGGCACACTTGTGGTTCGTCCCAGAATTCATCCAGAAGAAGGCGTGACTGAAGCCGTAAAAACCAAAATTCATGTCCAAGTGCTGATGGAACCTCTTGAAAAGGTTTGTAGTATGGATGTTTTTGATCAAGGAGACGGAAGTTATCAAGTAAAATTTGTTGCTAAGGTTCCTGGTTGTTTGAAAGTCTCGGTGAAGATCAACAACAAGGAACTTGCAAAGAGTCCCTTTACTGTCCATGTGAAGGAGCGACGTATTCAGGTCGTTGGCGAGTTAGAGTTTGTAGGAAAAGTTCCGAAAGATCCTTCAGCGATTGCCGTAAATAGTGAAGGGTTGATTGCAGTCGGTGATTATGGAGGTCATTGCATTCTGTTATATAATGCGAAAGGAGAGTATCAGAGAGAACTAGGTTCGTATGGAGAGAATGAAGGCCAATTTCACAAGCCAGCAGATATAATTTTCATCAATGATGACGAGGTTTTAGTTGCCGATGCAAGAAATCACCGCCTTCAGCAATTCAACGTCAAAACAGGAAACTTTATCAAGAGCTTTGGCAAGGAAGGAAGAGGAGCTGGAGAGTTCAATTTTCCCTGCGGTGTTTGTATGGATGATTCAGGGAATATTGTCGTAACTGATACGGGCAACGGCAGAGTCCAGGTTTTGACCGAGGATGGCGAACATTTGCTTACATTTGGTGAGAATGGCGAACTTGACCGACCAGTAAAGTGCATTTACTGGCGGAATGCTTATATTGTATCCAGTTTAAGGAATCACATCTTGAACATTTTTGACTGTGGTGGAACGCTTCTATACCAGATAGGAGAATCTGGTACTGAAAACCGACATTTGCCTAGTGAGCTGTGGAGATTTTGCATCGAGAGTTCTCGGAATCACCAGAATCTTCTCGTGAATGACGATAATGGTTGCATTTATCAGTTCACAATGGATAACTGCTGGACGGGACAAACTGTTGACAGTTTAGAAGGTGTCATATCAATAACTGCAGCTCCAGATGGGCGTATTTTAGTTGTAGGTGAGAAAGCAAAAACAGTGCTATTCTTGAAATAG

Transcript

amic_s0003.g73.t1

TTGTACAAGGTTTCAATCTTTTGGGATGGAAAAGGTACAAAAGCACATAAATGTTGAAGAAAAGAAGACAAAGAGCTGTGATTTGAAGCAATTATCTTTACATCAATCGCCGTCAATCAAACCCGCAGCTGATAAGAAGCCGGTATTTTTTCCATTTCCTTTCTCGCCATACGACATCCAGGAAGACTTCATGCACACTTTGTTTGATGTGCTCAACAATGGAGAAGTTGGAATCTTCGAGAGCCCCACTGGAACGGGCAAGTCGTTAAGTTTAATTTGTGGTGCACTGACTTGGTTGAAGAATTATGAGGAGAGAAGACAAGAAGAGTTAGAGAATGCACTGTCAAGTTCGGATAAAGATGATAATCAAAGGAACATTACAACAAAAGATGTACAAAATGACTCTGCATCAACACCAGACTGGGTCATAGAATTTGCTGAAAAACAAGCTAAGCAAGAAAAGGAAGACAGATTGAAGGAAGAAAGAGAAAGGATTGAAAAACAAAGGGCTCAAATTTACAAGCTCAAGAATGAAATAAGACCCGCTTTTGCCATTAAAGGGAAGAGAAAACATAGTGATGACAAGCTAAGTGACTTTCACATGGGAGAAGAATTATCGGAAGACAAAATTTCTGAAGAGATCAATGAGGTGTTAGGCAAAACCATTAAAAAAGATCCCGATGCGGATATTGTATTGACTGAGTATTTCAGTGAAGGAGAAGATGCAGGCTCAGACCAAGAGGAAGATAATGATAAACGCGAAGAGCCTCACTGCCTAAAGATTTACTATTGCAGTCGAACACACTCACAATTAGCTCAATTTGTGCGAGAGGTGCAAAAGAGTCCCTTTAATGAAAGCACAAGAGTGGTTTCCTTGGGATCAAGACAGAACCTCTGCATTAATGATGATGTTAAGCAACTAAAAAATATAAACAAAATTAATGACAGATGTTTAGAACTTCAGAAAAAAGACAAAGAGAAGAAAACAACATCTGATGGAGAGAAGGCTCCAAAGAGGAAAAAACTTCTGACAGGGTGTCCTTATTATTCTTACCAACAGTTGCAGAGATTTCGAGACAATGTTTTGATTGACATTAAAGATATCGAACAGCTCGTTTCTATTGGAGAAGAACTTCAGGCGTGTCCCTACTATGGCTCAAGATTAGCCATACCTGCGGCACAACTTGTTGTTTTACCTTACAACTTACTTCTTCACAAGTCTACAAGAGAAGCTTGTGGAATAAAGCTTAATGGCAATGTAGTTATCATAGACGAGGCACACAACTTAATTGACACAATCAGCAGTGTCTACAGCGTGGAGATTACGGGTTCTCAGATTTCACGTGCCCATTCTCAGCTAACACAATATCAAGATCGCTACAGGACAAGGTTAAAAGCAAAGAATTTACTCTACATCCAGCAACTCCTGTACATTCTTATCTGCTTCTTAAACTGTTTAGGGGGGAAGGAGATGCTTTCAAATTCCAAAATGCTCTCAACAGCTCCTGCTGAAAATGGTGTTCTCACTGGCCTAAGGGAACAAAGGGTACCAGCGGAAGTGAAATTAAAAACAATCAATGACTTCTTGTTTTCTGCAAAAATGGACAACGTTAACCTTTTTAAGATAAAAAAATACTGCGAGAAGAGCATGATTTCGAAGAAGCTTAATGGATTTGTCGACAAATACCAGTCTGGGCAGGTAGATACAGGGCTTAATGTGGAACAGGAATACCAGAGTAGCAGCTCACCACTGCAAATCATTGAGAGCTTTTTAGAAGCACTAACAAATGCTGACAAAGATGGAAGGGTGGTAGTAAATAGACAAGGTCGACTAAGCTGTTCCAGTCTCAAATTTCTTCTGTTAAATCCAGCTGTTCACTTTACCAACATTGTGAGAGAAGCAAGGGCAGTTGTTGTTGCTGGAGGAACAATGCAACCTATGTCAGATTTCAAAGATCAGTTATTCGCTTGTGCTGGGCTTCCTAATGAAAACATAGTAGAGTTCTCCTGTGGTCATGTTATTCCAGCAGAGCATTTATTGGCAGTAGCGCTCGATAGAGGACCATCAGGCAAAGAACTTGACTTCACATATCAATCCCGAGGCTCCACTGAATTGAAAGACGAGTTAGGCCGTCTCCTCGTCAACATTTTTGCTGTAGTTACTGGCGGAGTTGTCTGCTTTTTCTCCTCGTATGACTACGAGGACAAAGTTTATTCACACTGGCAAAAAACAGGCATTCTTGAAAGGATGAACGCGAGGAAAAAGGTCTTTAGAGAACCAAGAAAAACGAACCAACTCGACCAAGTCCTCTCCTCTTATTCTTCTTACATTAAGAATTCTGCTGACAACAACCCATCTCCAAATGGTGCAGTTTTGTTCTGTGTGGTCGGAGGCAAAATGAGTGAGGGTATTAACTTTTCAGATGAGCTCGGAAGATGTATTGTGATGGTGGGTCTTCCGTATCCTAACATGTATTCACCAGAGTTGAAGGAAAAAATGACGTATCTTGACTCCACATTAGGGCCCAAAGCTGGACAAAGTCATTACGAAAACCTGTGCATGAAAGCTGTTAACCAATCAATAGGTCGAGCTATTCGTCACAGAGGGGACTATGCGACGATTCTTCTGTTAGATCAACGCTACGGCTCTGCCAGAATAACGAAAAGTTTGCCTGATTGGATATCAAACAGGCTCCAACATCACACTCGCTTTGGCTCTGCATTTGCCGCCATTCGCAAGGGGCATGCACGAACAAGCGCTAGAAATGGAAAGTTTCTCTGCCCCGAATGTCAGGCAGAAACGACTCTCCCTGACGAAAATCGATTCGACAAACTACCCACAAGTTTTCATCACAATAGTTTGCTGAGTGTTCTGGGCGTCCGACAAGTCGGCGATGGAAGCGAGATCAGTTGTGGCATTTGTAAGAAGACTAGTGTGGCAATAAGTTATTGCTTCGACTGCGAGAAGTTGATGTGCAGTGACTGTAAAAACGCTCATGAATTGTTCAGGAACGCCGCCTTCCAAGGCCACAAGGTGACTCCAGTGAAGCAATTCCAAGATCAAGACTACGAAGCGTTGTTGAAGAGGCAGTCCTTCTGCTCTCACCAATACCACGAACGAGAGCCAGCAAGGTTTTACTGCACGGAATGCGAAATGTGTGTTTGTCAGATTTGCATCAAGACCATACACAAACACCACGGAGTCGAACTACTTGAGACGGCACTGGAAAGTGCGAATGAGGAAATTCAAAGGCTAGCTGAGATGACGAAAGAAAGAATCAAAACCTTTCATGCTTCAATTCGTCAGATTGAAGAAAGGGAAGCAGAGATGGAGGCAAACGTCGCTTCCTCAAAGCGTGAAGTTTCCCGAGCAGCTGATCAGATCGTGGCCAAGGCACGCGAACTTGAACGCGATAACATAACTGCCCTCGAGAACACGCGCCTTTTAAACGCGCAGAAGTTTAACTCGGCAAAGCAGCAACTACAGTCTTTCGCCAAGCAATTCACTCAAGCGGTCGATTTCGCCCAGAAGATTGTTGAAATTAATTCTTACTCAGATGTTATACAAAGTCACCAACAAATTGTCTCCCGTTTTAAAGACCTCGATAGGATTCCAATCCCACCACTTCCGGCTCGTTCATCAGCGATGTTTGTCCAAACTTGTAATCCATCGAATTTAGAGCTTGGCTTCACGACAACAGCCGATGTCGATGTAAATAAGTCTGTAGTCAACGGCCTGAATCAAGAATTTCAAGCTGGCGTAGAAGGCACACTTGTGGTTCGTCCCAGAATTCATCCAGAAGAAGGCGTGACTGAAGCCGTAAAAACCAAAATTCATGTCCAAGTGCTGATGGAACCTCTTGAAAAGGTTTGTAGTATGGATGTTTTTGATCAAGGAGACGGAAGTTATCAAGTAAAATTTGTTGCTAAGGTTCCTGGTTGTTTGAAAGTCTCGGTGAAGATCAACAACAAGGAACTTGCAAAGAGTCCCTTTACTGTCCATGTGAAGGAGCGACGTATTCAGGTCGTTGGCGAGTTAGAGTTTGTAGGAAAAGTTCCGAAAGATCCTTCAGCGATTGCCGTAAATAGTGAAGGGTTGATTGCAGTCGGTGATTATGGAGGTCATTGCATTCTGTTATATAATGCGAAAGGAGAGTATCAGAGAGAACTAGGTTCGTATGGAGAGAATGAAGGCCAATTTCACAAGCCAGCAGATATAATTTTCATCAATGATGACGAGGTTTTAGTTGCCGATGCAAGAAATCACCGCCTTCAGCAATTCAACGTCAAAACAGGAAACTTTATCAAGAGCTTTGGCAAGGAAGGAAGAGGAGCTGGAGAGTTCAATTTTCCCTGCGGTGTTTGTATGGATGATTCAGGGAATATTGTCGTAACTGATACGGGCAACGGCAGAGTCCAGGTTTTGACCGAGGATGGCGAACATTTGCTTACATTTGGTGAGAATGGCGAACTTGACCGACCAGTAAAGTGCATTTACTGGCGGAATGCTTATATTGTATCCAGTTTAAGGAATCACATCTTGAACATTTTTGACTGTGGTGGAACGCTTCTATACCAGATAGGAGAATCTGGTACTGAAAACCGACATTTGCCTAGTGAGCTGTGGAGATTTTGCATCGAGAGTTCTCGGAATCACCAGAATCTTCTCGTGAATGACGATAATGGTTGCATTTATCAGTTCACAATGGATAACTGCTGGACGGGACAAACTGTTGACAGTTTAGAAGGTGTCATATCAATAACTGCAGCTCCAGATGGGCGTATTTTAGTTGTAGGTGAGAAAGCAAAAACAGTGCTATTCTTGAAATAGCTTGACATAAAACTAAAAATGTGTTTTCAGA

Protein

Uniprot

Uniprot term	Description
F1R345	ATP-dependent DNA helicase DDX11 OS=Danio rerio OX=7955 GN=ddx11 PE=2 SV=1
Q6AXC6	ATP-dependent DNA helicase DDX11 OS=Mus musculus OX=10090 GN=Ddx11 PE=1 SV=2
Q92771	Putative ATP-dependent DNA helicase DDX12 OS=Homo sapiens OX=9606 GN=DDX12P PE=5 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13307	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR006555	Domain	ATP-dependent helicase, C-terminal	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR045028	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0034085	Biological Process	establishment of sister chromatid cohesion	Interproscan