Detailed information of amic_s0004.g18.t2 in Acropora microphthalma

Genomic Location: sc0000004_pilon:201866...233440
NR annotation: XP_044174136.1, thrombospondin-2-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P07996Thrombospondin-1 OS=Homo sapiens OX=9606 GN=THBS1 PE=1 SV=2
Q03350Thrombospondin-2 OS=Mus musculus OX=10090 GN=Thbs2 PE=1 SV=2
P35441Thrombospondin-1 OS=Mus musculus OX=10090 GN=Thbs1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004174 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13385
all species →		Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF02412
all species →		TSP_3Thrombospondin type 3 repeatDomainInterproscan
PF05735
all species →		TSP_CThrombospondin C-terminal regionFamilyInterproscan
PF00629
all species →		MAMMAM domain, meprin/A5/muDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000998
all species →		DomainMAM domainInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR017897
all species →		RepeatThrombospondin, type 3 repeatInterproscan
IPR000436
all species →		DomainSushi/SCR/CCP domainInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR003367
all species →		RepeatThrombospondin, type 3-like repeatInterproscan
IPR028974
all species →		Homologous_superfamilyTSP type-3 repeatInterproscan
IPR035976
all species →		Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR008859
all species →		DomainThrombospondin, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10199
all species →		THROMBOSPONDINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0007155
all species →		Biological Processcell adhesionInterproscan
GO:0005576
all species →		Cellular Componentextracellular regionInterproscan
GO:0062023
all species →		Cellular Componentcollagen-containing extracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0004.g18.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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