Gene detail

Detailed information of amic_s0005.g136.t2 in Acropora microphthalma

Genomic Location: sc0000005_pilon:1836394...1843617
NR annotation: XP_015753798.1, PREDICTED: SPRY domain-containing SOCS box protein 3-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0005.g136.t2

CCCGCAATTCCATTTGCTCTTTGCAAAACTGACGCTTTTCACTGATATACATGAAATATGCAATCTATTTTCCTTGAACTTTTTGTGTTTTTGCTTAAGAGAAAAATCTACCTTCACTTTCTCGCTTGATAAATGGTGAACTTGTTTAGACGAGCCCGCAACTGCTTCAACACTTGGCAGCAGGTTACGCCCAAAATATATTGATTATTTGACGTCAACAAAACAGAAATGTGAAATTGTTGAGTGTACCTGCGAGATAAGGGTTGGAAAGCAGGGCTGCCTATCAGTTTCAGAGAAACAAAAAGCAACCCAAGAATTCATTGGCTTTAAGTGATGGCCTTAGTCCACACGAATTACCACACAAACCCGTTAGAGAGTTCAAGGTTATCTCAGCGCGAACTGTTAGCGCGCATTTTCGGCCATAATGGCGCCGAAGGAGAGCATCGTAGCGATTATGAAGACAGCTCAAGTGAGTCAGGATCCGACTATGAAGTGGAGGAATGTCATGAAGCTGCAAAGAGGGAGAAGTACAGTTAAGAGAACTTCTTGGTCTACAAATGGTTGATCTTCCTTCACCATGTCAAGGCACAGGTCTTGACGAAAAAGGAAGTGGTTTTGAGGTTTGAAGATTTTATTTGGTGTTGGGATCCAGATACACTTTCATCATCAGTGTGTCTCACACGGGGGAACAAAGAGGTACTGTTCCATCCTGACTACAGCTGTGGAACTGCTGCAGCCAGAGGCTCCCTACCTCTAACACAGGGAGGTGAATACTATTGGGAGATTAAGATGACAAGTGCAGTCTATGGTACAGATATGATGCTTGGAGTGTGCACAAGTGACACAGATATCACCCAGTACAAAACGTCATTTTGCAGCTTGGTTGGTAAAGATAACACAAGTTGGGGCCTATCTTATATTGGTAATTTCCATCATAATGGAAAAGCTCACAATTATACCTCAAGATTTGACCAGGGAGCAGTTATTGGGGTCCACCTGGATGCATGGCATGGAAAGCTGTCTTTCTTTAAGGATGGTGAGCCTCTTGGTGTGGCTTCCAAAGGACTTCTTGGAAAAACCCTTTTCCCTGTAGTTTCATCAACTGCAGCCAGAACAAAAATGAAGTTGCAACGCAGTTCCGCTGCATCCTTTTCTCTCCAATACCTTTGTTGTGCCACCATTGGTAAGAACCTGCCAAATGTGCAATCCCTGGAGTTTCTACCAATTCCCCCTGGCATCAAGCGACATCTTTGCAATGAATTTGATTGGATCTTCAAGGTTCATTTGCCTTCAAAACAATCCAGCTAGCTGTGGTAAAGGCAATTTTAGACTTAGTCTAATGAATATCCTTTGAGGCTCAAAAAAAATTAAAGTTGAGAACATTTTTGACATTTTCAGTGGCAAACCTTACTTCTGCACTTGTGAGCTCTGAGCATTTTAAAATGTATGTTACTGATGAATGTTGATCAATCAGCTAATGAAATATTTTGTGTTAGTCCAGTGACATCCCAAATGTATATTTTACATCGTTATTTTGATGCACTGTTGACAAAGGTATATCTAATTTACAGTAAGTTGGTTGGGTTTGTTTTGTTCTTGTTGCCTGCGAAGAATTTATAGTGCAATAAATTATTAGAGGAAGTTGCTGTTCATGTGTACATAATGTAAGTTAAGTTAAAAGCAGTGATGGTGACTTGACTGAGCCAAACTATTTGACCTGCAAGTCTCTAGAAAGTGGCTATATTTGAATGAAAAGTTTCTTCAACTTTGCCATTTACAATTTAATTTCTTCTCAGATTTTGGATACCCTAGGGAATGTATCATGAATGAATAATAATACTGTTCATTGCATTACTTTGACATTATTAGAACATGCTTGACTGTATTTAATTCTCAACTTTCAGGAGCTTGCCAGGGTTTATGGAATGTGGGAGAGTAATATTTATTACATTTAGGTGACATTTCAAAATTTTATTTGCCAGTGTTAATTTATTTTCCTTGGTGCTTGAAATTTTTTGAATAAAATTATTGAAGTTGAGAGTTTAAAACTGTGGAGATGGACAAACATTTGCTCTGATTATCAGGATTCAGTACTGGCAGAATGATGGTTTACCAAAAAGTCGACTTTGCAAGTTGTAATGTTACTATTACAGAGGCAGGTCCAGAAATAAGATTGAATTATTCCTTGGACTTTCGTTCTTTAACAATAGATTTTTAATCTGGAAAGTGGTGGTTGTCCATTGAGCAAATCGTCATCTTTGTAAATACGTTTGAAAAATAAAGAAAGGAAATTGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5M9B1	SPRY domain-containing SOCS box protein 3 OS=Xenopus laevis OX=8355 GN=spsb3 PE=2 SV=1
Q28DT9	SPRY domain-containing SOCS box protein 3 OS=Xenopus tropicalis OX=8364 GN=spsb3 PE=2 SV=1
Q6PJ21	SPRY domain-containing SOCS box protein 3 OS=Homo sapiens OX=9606 GN=SPSB3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005365 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|SOCS · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001496 all species →	Domain	SOCS box domain	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR050672 all species →	Family	F-box/SPRY and SOCS box protein families	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan
IPR036036 all species →	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12245 all species →	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0005.g136.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.