Gene detail

Detailed information of amic_s0005.g153.t1 in Acropora microphthalma

Genomic Location: sc0000005_pilon:2017458...2030888
NR annotation: XP_029193108.1, RNA binding protein fox-1 homolog 3-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0005.g153.t1

TAGTTGCGGGATTCTGGATGGTTTGATAAGTTGTCAGACAGGAAATTTCCTTTTTATTCGTTATATTTTGCAGTGGCTAATAGCGCATTTTTGTTAAGAAATCAATGGAAAAACAAGGAACCACTTCAGTGTCCTCTGAGGTTGGTTCATCGGTTAATGGATCCGCGGAAAAGCCGCATGAAACGGTCAGCAATGGTGTCCAGTACACTCATCCTATAGCTGTCCAGCCCTATGCTGAAGTCACTGTACCACAGCCTATAGATGCAACACAGCAGTTTCAGCTGCAGGCCCAGGCACACCAGCTTCAAACAACAGAAGTTCTCATACAGAATGGCGACACAGGACCCAAGAGATTACATGTCACCAATATACCATTTCGATTTAGGGATCATGATTTAGCTCAAATGTTTGGGCAATTTGGAAATTTAGCAGATTGTGAGATAATCTACAATGAACGAGGGTCTAAGGGTTTTGGATTTGTCACTTTTGTGAATTCTGCAGATGCACTGAAAGCAAGAGAAAAGCTTAATGGGACTATAGTTGATGGACGGAAAATAGAGGTTAACAATGCAACCCCTCGACCGCACGTCAAAAAAAGTCCGGGCCAAAATCGAGGACCCTATACAAATGGTGTTACTTTCCGTGGCATGAGAGGTGTTCGCCGCCCATCTCCTGTCAACAAATTTAGTACTCGAACAATACAACCCTCATCTGCAGTACCAACTTTTAATGGCACGTATACTGGAACATATGACGGTTATGAACAGACATATGGCGCCAGAAGAATAGGAAATTTTACGGGATATGAAACAGCAGGCGTCGCCGCAGCGCCTTACGGCGGTGGATATGGCCCGACTAACACCTATGCTGCTTCAGCGCCGGCTTATCGGCCAGTTGCTCCACCCCAGGCCCCACCAACAGGCTACACAACAGGGTACAGATATGCGCCGTATTGATTACGTGACAACACACCTTGACACATCCATGCACCACGTACCATACCATCCAAGAAACATCACAGATTAGCAAGACTCCAGCGAGTAGAAAATGTTCATTTCCTTCAGGAAAGAACCCTTGATTCATTATGTATGGATACGTCATCGTTAACATTTAATTCCTTTTGGCAATTTTATGGAAAGTAACATTTCAAGAGAATCGGTCGGAAGCTGTGCTACAAGGATCATTCTATCACGATACGACGTTAAAATATCGTAGACTCCAAAATGTGCCATTCTTTTTGGTTGCCAACGATTACATCCATGATTTCCGTAGCATGAACAGTTGTTTGTGTTTTGATTTGTCAGAAGCATAAAAATATGGCTCATAGAGGACGAAAAAGCTATCCTAATTCTTGGAATATACGAGTTGAGTTTCGTTTACTTTTCGTTGGTTATATGCTTAATGCTAACCTACATATAAAACAAAAACTAATGTTAGCCGTTGATTAGAATTGTTTTGTTCAGACCTTATGGTCATTACGTGGGCATGACGTCTTGAAAGGAAAGGTTTGGTACCTGAGATGTCCTGAACTTCAAATTAGTGTGTTAGTTTTCCAAATGGAAATCGTGTTCTACTTGACACGCCATCAAACATCGCCGTACTGTGGCTCTCTAATGCGTTCATATATCGTTCAATACTCAAGGACCTTCAGGAAAACCACACGCACGACCTTAAGAATGCACTCTAAACTCTAAGGGGTTGAATAGTCACAGGAGCTCATAAGTAGAAAcaaccttttgccaagaaaaaatatttttaaaacttttttttattgtgatggcttcgcaggtcggcagataacgcgaggcaccattgtcataactcttcttcaattgggttgatagccgttctaaaagtaaatcatctcagggcactcttgacttcaaaccccattatggcagataaaggctccttcgacccatgagctcctGGCAGACATTAACACTTTTCTACCTTTTGTAGTCTTTGAAAATGTGGCCAGTGCATCCGAAGAGGCTAGCTCTGTTTTGAGTTTTTGGCAACACTTTTTTCCCGGTTGCTCAACTCTACTGGCACCTTTCGTTACGTTCTACTTCATTTCCTCTCTTAGCCATTGTTTTTCTATCGAGATTAAAGCGCATTTAGTGCCGAATTTTTGACGATTCTGAAATTTGGGTGATGCTGAAGTTTCGAAGTCAGCAATGTAGTTGCCATCGGCATTTTCTAATTTAGTATTTACCCCTTGGGGTAGGAACACTCTTCGTAGATAGGCAAACTACTTTGCATTTTGTACAGAAGTGTAAATTACACGTATACCTTTGAAATAATTGTAAATGTAGAATTTCTGAGACACGAACAACATAAAGTAATATAAAAATGAATCGTTTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6NFN3	RNA binding protein fox-1 homolog 3 OS=Homo sapiens OX=9606 GN=RBFOX3 PE=1 SV=4
Q8BIF2	RNA binding protein fox-1 homolog 3 OS=Mus musculus OX=10090 GN=Rbfox3 PE=1 SV=2
Q95KI0	RNA binding protein fox-1 homolog 1 OS=Macaca fascicularis OX=9541 GN=RBFOX1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004522 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR047131 all species →	Family	RNA binding protein fox-1 homolog 1-like	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034237 all species →	Domain	FOX1, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15597 all species →	ATAXIN 2-BINDING PROTEIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0005.g153.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.