Gene detail

Detailed information of amic_s0005.g72.t2 in Acropora microphthalma

Genomic Location: sc0000005_pilon:1097177...1104643
NR annotation: XP_044184103.1, zinc phosphodiesterase ELAC protein 2-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0005.g72.t2

ATGGCCGCCGTTCAGACCTCCTCTCTTTCTTTTAAGACTTCTCTGCGTCAAGGACATGGGTTTCTACGAACAATCCACAAGCAGAAAAGATTTCAGTTTCGCTGGCATTGGTGTGGCAGGCACGCTGGTAAAGGCAAACTTGTGTCTACAAGATCTTATCTGCAGATCCTTGGGACTTCAACAGATTACAGTTCTCCCAGCTTTCTGCTCTTTACGGACTCATACAGATATTTATTTAACTGTGGGGAAAATACAGTAAGGATCCTCCATGAATTGGATCGGTTGAAAATGAACATCAGTCGTGTCTTCTTGACAGGGATGACATGGCAGAACCACATTGCAGGCCTTCCCACATTACTCAAACGACAAGCCACAATCAATGGAGGTCCTTTATTGATTTATGGTCCAGAAGGAATCAGCAAGTTTCTTGATGACATTTCAACATTTTCAAGTACTGGACTGCAAAGATATGATGCCCTGAAACTCTTTACGAGCACTGAATTTGACAAAAATAATACTGATGAACAAGAAGAGCGATATGTTGATGACAATTTGAGCATCATGCCTGTTATTTTTGAGAGAAAATATCAAGATGTGAGCTATTCAGAGAGGCAATCTATTTGCTATATTTGTGAATTTGCTGATCTGCCTGGTCACTTTCTCCATGAAAAAGCAGTGAAGTTGGGTGTCTCTGAGGAGCATTTCAATGAATTAGCTCTTGGAAATCAAGTTTTATCCAGTTATGGACAAAAGGTTGACCCATCTCAAGTTTTGTCTCAGAGTTCCCCTGGGCAGGTTTTCATGATAGTGGATTGTCCTTCTGAAGAAATAAGTCAAAATCTGGTTCATAGTATGGCATTTTCACAGTTTTACAGCAGCAAAGGCTCAAAAACACCTCATGTCATAATTCATATAACGCCATTAGAAATCTTTCAATCTGAATCCTATGAGGCCTGGAGAGAAAAATTTGGCAAAGGCACCACACATATTCTAGTTAACAAACAAGTAGTAAAGCAAGGGACTCCCTTTTTAAGAAGCGTTGCAATCCAAAGTGCATTATCTGTAATTGATAGAGATATTTTCCCACCTATTGCTGTGGTGGATAAAGATGTGTCCATGCAGAGACAGGATGTTTGGAATGATTACATTCCAGCTGAGACTCTGTTGAGTTATCAATTTCGTCCTCTTAAATTTGAGGGATTGACGAGGCGGAATTTGAGACATGGCTATGAGGCAAGTGACTTCTTACAAATGTCACAGAAAGCTTCCATGAAATTGGACCAGGAAGATTTAAAATCTGTTGGTAGTTCTAGTGTTACTTTGAAAGAAGAGCATCTACAAACCATGGTTGACAGCAAGGTCACATTTCTTGGTACAGGCTTTGCCATACCCTCTTATGGCAGAGGTCAAAGTGCAATATTGGTTCACACAAAGGCAGATAAAGCCATTCTTCTGGACTGTGGTGAAGGGACATATTCCCAACTTTGCAGCTTGTACAAGGAAGGCACTGCAGACATTGTGGCTTCTCTCAAATGCTTATTTATATCACATCGTCATCTAGATCATCATATTGGATTGATGCAGCTTCTTCTTGAGTACAAACACCTGGCAGAAGAGAGACAGCTTCCTCGTCTTCCTATCATTGGGCCTTGGCGGCTCTTTCAGTGGCTGACTCATCACTCCAAGTTGGTAGGAAAAGAGTTGCCCATTAGGTTTCTACCGTTTGGAGAAGTGAAGAATAAAAAAGTGGAAGACCAAATCCAGGAGATTCTAGATGCGCTGGATCTAAGTAATCTTGAAGTTGTGTCTGTGCTTCACACTCGAGACAGTCACGGAATCATATTGAATCACTCTTCAGGCTGGAAGCTGGTGTATTCTGGTGACTGTGTGCCTTCTTATAATCTCATAAATAAAGGTAAAAATGCAACTCTATTGATTCACGAAGCAACCTATTTTGAAATTCCTAAAGAGGAACTTATACGAGGAAGACACTGCACACTGGCCGAAGCTATCATGGTGAGTCGTGATATGGAAGCCAGCTACACCGTTCTCACGCATTTCTCAAAACACTGGAAGATTTACTGGCCGCGAGAGTCTGGCAATTTGAGGCTGGGACCAGGAATCAGCGCAGCTTTCGACTTCATGACGGTTCGCTTCAGTGACCTCTCGAGACTTCATAAACTGCGGCCTGCCATCGCTAAAGTCTTTCAGAAACCACGACATACCCAAAAACCACTAATGAAAACGCCAACTCCTCGAAAACAAAGAATATCTCGTCGAGAAAGAAACCAAGAATTATTTAAAATGTTATTTTGA

Transcript

amic_s0005.g72.t2

CCTCGTTCCCAGTCTTTTCCCAGGCGAAATTTTAAAATGGCCGCCGTTCAGACCTCCTCTCTTTCTTTTAAGACTTCTCTGCGTCAAGGACATGGGTTTCTACGAACAATCCACAAGCAGAAAAGATTTCAGTTTCGCTGGCATTGGTGTGGCAGGCACGCTGGTAAAGGCAAACTTGTGTCTACAAGATCTTATCTGCAGATCCTTGGGACTTCAACAGATTACAGTTCTCCCAGCTTTCTGCTCTTTACGGACTCATACAGATATTTATTTAACTGTGGGGAAAATACAGTAAGGATCCTCCATGAATTGGATCGGTTGAAAATGAACATCAGTCGTGTCTTCTTGACAGGGATGACATGGCAGAACCACATTGCAGGCCTTCCCACATTACTCAAACGACAAGCCACAATCAATGGAGGTCCTTTATTGATTTATGGTCCAGAAGGAATCAGCAAGTTTCTTGATGACATTTCAACATTTTCAAGTACTGGACTGCAAAGATATGATGCCCTGAAACTCTTTACGAGCACTGAATTTGACAAAAATAATACTGATGAACAAGAAGAGCGATATGTTGATGACAATTTGAGCATCATGCCTGTTATTTTTGAGAGAAAATATCAAGATGTGAGCTATTCAGAGAGGCAATCTATTTGCTATATTTGTGAATTTGCTGATCTGCCTGGTCACTTTCTCCATGAAAAAGCAGTGAAGTTGGGTGTCTCTGAGGAGCATTTCAATGAATTAGCTCTTGGAAATCAAGTTTTATCCAGTTATGGACAAAAGGTTGACCCATCTCAAGTTTTGTCTCAGAGTTCCCCTGGGCAGGTTTTCATGATAGTGGATTGTCCTTCTGAAGAAATAAGTCAAAATCTGGTTCATAGTATGGCATTTTCACAGTTTTACAGCAGCAAAGGCTCAAAAACACCTCATGTCATAATTCATATAACGCCATTAGAAATCTTTCAATCTGAATCCTATGAGGCCTGGAGAGAAAAATTTGGCAAAGGCACCACACATATTCTAGTTAACAAACAAGTAGTAAAGCAAGGGACTCCCTTTTTAAGAAGCGTTGCAATCCAAAGTGCATTATCTGTAATTGATAGAGATATTTTCCCACCTATTGCTGTGGTGGATAAAGATGTGTCCATGCAGAGACAGGATGTTTGGAATGATTACATTCCAGCTGAGACTCTGTTGAGTTATCAATTTCGTCCTCTTAAATTTGAGGGATTGACGAGGCGGAATTTGAGACATGGCTATGAGGCAAGTGACTTCTTACAAATGTCACAGAAAGCTTCCATGAAATTGGACCAGGAAGATTTAAAATCTGTTGGTAGTTCTAGTGTTACTTTGAAAGAAGAGCATCTACAAACCATGGTTGACAGCAAGGTCACATTTCTTGGTACAGGCTTTGCCATACCCTCTTATGGCAGAGGTCAAAGTGCAATATTGGTTCACACAAAGGCAGATAAAGCCATTCTTCTGGACTGTGGTGAAGGGACATATTCCCAACTTTGCAGCTTGTACAAGGAAGGCACTGCAGACATTGTGGCTTCTCTCAAATGCTTATTTATATCACATCGTCATCTAGATCATCATATTGGATTGATGCAGCTTCTTCTTGAGTACAAACACCTGGCAGAAGAGAGACAGCTTCCTCGTCTTCCTATCATTGGGCCTTGGCGGCTCTTTCAGTGGCTGACTCATCACTCCAAGTTGGTAGGAAAAGAGTTGCCCATTAGGTTTCTACCGTTTGGAGAAGTGAAGAATAAAAAAGTGGAAGACCAAATCCAGGAGATTCTAGATGCGCTGGATCTAAGTAATCTTGAAGTTGTGTCTGTGCTTCACACTCGAGACAGTCACGGAATCATATTGAATCACTCTTCAGGCTGGAAGCTGGTGTATTCTGGTGACTGTGTGCCTTCTTATAATCTCATAAATAAAGGTAAAAATGCAACTCTATTGATTCACGAAGCAACCTATTTTGAAATTCCTAAAGAGGAACTTATACGAGGAAGACACTGCACACTGGCCGAAGCTATCATGGTGAGTCGTGATATGGAAGCCAGCTACACCGTTCTCACGCATTTCTCAAAACACTGGAAGATTTACTGGCCGCGAGAGTCTGGCAATTTGAGGCTGGGACCAGGAATCAGCGCAGCTTTCGACTTCATGACGGTTCGCTTCAGTGACCTCTCGAGACTTCATAAACTGCGGCCTGCCATCGCTAAAGTCTTTCAGAAACCACGACATACCCAAAAACCACTAATGAAAACGCCAACTCCTCGAAAACAAAGAATATCTCGTCGAGAAAGAAACCAAGAATTATTTAAAATGTTATTTTGAAATTGAAATAAGTGTGTGATTGAAAAAGAGGCTTTTGTTTCTTCTTAGACAAAAACAGGAAATAAACTGATCTTTTAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80Y81	Zinc phosphodiesterase ELAC protein 2 OS=Mus musculus OX=10090 GN=Elac2 PE=1 SV=1
Q8CGS5	Zinc phosphodiesterase ELAC protein 2 OS=Rattus norvegicus OX=10116 GN=Elac2 PE=1 SV=1
Q8HY87	Zinc phosphodiesterase ELAC protein 2 OS=Macaca fascicularis OX=9541 GN=ELAC2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002053 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13691 all species →	Lactamase_B_4	tRNase Z endonuclease	Domain	Interproscan
PF12706 all species →	Lactamase_B_2	Beta-lactamase superfamily domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027794 all species →	Domain	tRNase Z endonuclease	Interproscan
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan
IPR047151 all species →	Family	Zinc phosphodiesterase ELAC protein 2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12553 all species →	ZINC PHOSPHODIESTERASE ELAC PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0042781 all species →	Molecular Function	3'-tRNA processing endoribonuclease activity	Interproscan
GO:0072684 all species →	Biological Process	obsolete mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0005.g72.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.