Gene detail

Detailed information of amic_s0007.g23.t2 in Acropora microphthalma

Genomic Location: sc0000007_pilon:375536...384174
NR annotation: XP_015763861.1, PREDICTED: homeobox protein Meis1-like isoform X3 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0007.g23.t2

CATCTTTTCCTTACATTGAGTTGACGGGTTGTAAGTTTAGAAAGCTATCCAACTGTGTTAGCCCTAAACTGATTGTCAGAAGTTGGGATTAAACATTTGCAGCTTTTTTTACGATAACAATCCTCCACAATACGGCTCGTAACCCTGGAGCGGACTGGAAACGCATCGTATGGCACAATGGCCCTATGATGAAGTGGGCCCTTACCCAATGGACGTTGCAACCTCAATGTACGATCACGGTCGTTCCGGAGCTCCAATGCAGCATTTAAACCATACAAGCGCCACTTCTCCGTACCATCACCCGCCTGCTGCTGGAGGAGGAGTGTCGAGTGCTATGAGCGCTGTTTCAGATATTCAGAAACGAGATAAGGAGTTAATATATGGGCATTCACTGTTCCCGCTCCTCGCACTTATCTTTGAGAAATGCGAATTGGCAACATGCACTCCTCGCGAACCAGGAGCAGTTGGAGGTGATGTGTGTTCTTCTGCCTCATTCAACGAGGATATCCAGGTTTTTTCGAAGCAGTTCAGAAGCGACAAGACGATTTTTTCGTCCAACCACGAAGTCGATAGTCTGATGATTCAGTCGATCCAGGTTCTGAGATTTCATCTACTGGAATTAGAAAAGGTGCACGAGTTGTGCGACAACTTTTGTAAGCGCTACATTTCCTGCCTGAAGGGTAAAATGCCCATTGATCTTGTTATGGATGAAAAGGAAAATATTGGAAAGAGCAGAAGCGACAGCGAAACTCTGGACATCGATTCCCCGCCTGACAGCGTTCTACCACAGCTACCGAATACTCAGCCCTGGCAAGCAGGGCAAGGAGATGAACCAGCCGGCTCTGGATCGAACTCTCAAACGTCCTCTCGACCGCCTTCGAATTCTGGGGTCGATGGGCCTACGACTCCGGAAGACCCTTCGTTAAACACGTCTGTTGGTTCAGAAGATGGCACGGGTGACAATACGGACGATGAACAGTCAAAGAAAAGTCAGAAGAAACGAGGGATCTTCCCGAAAGCAGCGACAAATATCATGAAGGCATGGCTTTTCCAGCATTTAACGCATCCTTACCCATCGGAAGAGCAAAAGAGGTCTTTGGCCCAAGAAACTGGACTAACCATTCTTCAAGTTAACAACTGGTTTATTAATGCAAGAAGACGTATTGTCCAACCAATGATTGATGCCTCAAACAGAGCAGGGAAGTCACCGGTTGTCACCGTTTTCAAGTCAAGACGCCGGAAAAACTCTTTAGGTCAAGGTCTTCCTTCACCAGGCCCAAGATTTGGCCCTCCGGGGGCACCCCCAGGCTATTATCCTGAGCAACATCACCCGCCTCCCCATACCAACTACCACATTGACGGAGGAGTGCCACAGCCAGCACATTTTGGACCAAGAGGCTATCTACAAACTGGTGATCCCTCAGTGAGTGGAGTTGGCACTATCCCTCCTATGTCGGCCATGGCAGGAGGACCACATTCTATGCACGCTCAAATGCCAGCTCATGCCTACAGATCCCCAATGCCTCCAACGTCAGTTCACCAAACCCAGCCAATGTACATCCCTGGACATCCTCATGCTATGATGATGCCCCCGCCGGGGCATCCCCACGCACATCCCCATCACCCCGGTCACCCGGGCCATCCAGGACAGCTCATACCTTCCACTCAAACTTCACCCACCTTAATTTCATCTGAAAATGTTTTGTCGATGTCGCAGCCTGTGATGGACATGCACTCGAGTTAAAAGTTGAAAGAAGAAATGAACGATGTTGACTGATAAATTACTGCTTTGTTTTGTTTCGCTTTTCCTTCAATAGCGCTTTGACTAGCATTTTTAGACAATAGAAAGTTCACAAATTGAGAATTATCGGTACTGTTTTCTGAAAGTTTCTAAAACTTTCGGTTTTTATAGGAGAAAAATTCAATGAATAGAAATTGTGTGTTTAGATTTCCATTGAAGAAGTGCGTGTCTTCGTGTGTTGATTAGCCGCTCTCCTTGCAGTCTTCCTTTCAAAAAGGAGATTTGAGAAATGGATGAATCCCCCGTTTTGTATGATTTTAAAATAGTTTCTTCCGAAAAGGTGTTGATGTTGATATGATGTACGATATTTCTGTAATAACGACATTTTCTTAGTATTTTGTTTATATGTGATGCTATTTTGTAAATGCAAATAGATAGACTTTTAAAATTAACCCAGATATATTATATATACgatgatgatgatgaagatgatgatgatTGAAATTTATGTATTTGTTAAATGAGAATTGAAGAAAAAGAAATATAAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00470	Homeobox protein Meis1 OS=Homo sapiens OX=9606 GN=MEIS1 PE=1 SV=1
Q60954	Homeobox protein Meis1 OS=Mus musculus OX=10090 GN=Meis1 PE=1 SV=1
O14770	Homeobox protein Meis2 OS=Homo sapiens OX=9606 GN=MEIS2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001133 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16493 all species →	Meis_PKNOX_N	N-terminal of Homeobox Meis and PKNOX1	Family	Interproscan
PF05920 all species →	Homeobox_KN	Homeobox KN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR032453 all species →	Domain	Homeobox protein PKNOX/Meis, N-terminal	Interproscan
IPR008422 all species →	Domain	Homeobox KN domain	Interproscan
IPR050224 all species →	Family	Three Amino acid Loop Extension (TALE) homeobox	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11850 all species →	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0001654 all species →	Biological Process	eye development	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008284 all species →	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0009880 all species →	Biological Process	embryonic pattern specification	Interproscan
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0007.g23.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.