Gene detail

Detailed information of amic_s0008.g149.t2 in Acropora microphthalma

Genomic Location: sc0000008_pilon:2119773...2127582
NR annotation: XP_044184594.1, ERI1 exoribonuclease 2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0008.g149.t2

GGATGAATTTTTTATTGAGCTAAAAGAGTTTCATACAAGGGTGTCCAAATCAAACCAGTCGATGCTAGTATTTTGTCGTACAATCGAAACGTGTTCCTTTCGATATAATGAAAGTGTTTTCTACAGAAAAAGATGTGATTGAGAGTCATCTAGATTCTCTGTGGCTTGACGAATAGAATCCACGTTCATCCAATGTTTTCTTTCACATAGATAGTGCTCTTCAATGTTTTTAACAGCCCTTTACTTGTGATGTAGGCGAAACACATTGAAATGATGTGCAGAAAAAGAGGCTTTGTCATTGTCTGTCTCGGTGACTAAAATATCCAACATTGTCTACTACTGAAGAATTTAAACAAAGAGCTTCTCATTACAATGAAATTGAGTCCAGTAAAAACGAACGTTTCTTACGGAGCTGTTTTTCTGCAACACACCAGCTCGGTAACCAGGACTTTTTTGCAGCCGTTTTGTACTTTCACGCTTTGGCGTGTCCACCAGACGCTGGAGGTCCTTCTTTCATGGGGGAACCAGATGTCTTTGATCCCGAGGCCAGTTCGGCTTTCACTTCGAGTTTCTTTTGACTACCGGCGTTCGCGAACATACCAATTTCGAAGATAATCAACACTCCAATAACCCATATGAACCAAAGCTTCGTAAAATACTTGGCAAAAGTTGCAAGGAGTGCAACGGTTACGATTCCAAACCCGATAGCCATTCTACGATTATTACACACTACTTGTCAACCTAAGGCTATCTGGTTATTAAATTTCTGCCAGGCGTTCCAAGCGAAAGCCTGAGGACGGAGAGAGGCTGTGACGTAATTTCCAATATGCGGCAATTTTGAATTATGTCGAAGATAACATACGTGAAAACATAAAACTAATGATATCAACAATATCCGCATGGTTTACTGAAAATATGGCTTCAAAAGGCAATAAGGCCCTGCAAAAGTTGTCTGACAACTCATTATCTACAAAAGAATTAGCAAGAAGCTTTGGCCTTGTCAAGAAAAGGCCATCATCCTCGTACCGGGAAAAAGGTCAAGAAAACAAAGCTAAAGCTGGTCAGTGTTTTGCATATCTGATAGTGCTTGACTTTGAATCAACTTGTTGGAAGGACAAAAAACTGAACTATGGCCCTGAAATAATTGAGTTTCCAGCGGTACTTCTAAACACTTCCTCTGGAGTTCTAGAAGCTGAATTTCACATGTTTGTCCAGCCTAGTGAACACGGGAAACTTAGTGAGTTTTGCACTGAGCTCACAGGAATTACACAGTCTCAAGTAGATGATGCTGTTCCAATTGGCACCTGTCTGATGCTGTTTGGACGCTGGCTACAAGAGACTAGAGACGCTAAAAGCATTAAATTTCCTTGTGATCTTGTGCAAAAGAAGGGACAAGAACAAGCAATGGAGACTGCAGACAAATTGTGCACGTTTGTGACATGGTCAGACTGGGACTTGGGGAATTGCCTGAAGAATGAGTGTTATAGAAAGCAGTTGAGAATGCCACAGCCAATGAGAAGCTGGATTGACTTGCGAGCAACTTATAAGAATTTCTACAGCCGTAAGCCACAAGGATTAGCCGGTGCTCTGCAAGATCTGGGAATTCAGTTCACGGGAAGAGAACATTCAGGTCTTGACGACGCTCGCAACACTGCTCGGCTTGCGTGGAGGATGATTTTAGACGGTTGCCTCATGCAGATAACAAAGAGCCTTGATGGGAGAATACAACCCGAGGAGCCTGGATCCGACTTGTTTCTGGAAAGAGAAATCCTTGGCTTCCAACCCACGACCCATGATTTGCGCTTGAGTTTAAGTTGAAACACCGACATTCAAATCCGGCGCGCTGCCGTACATAGGTTGATGATATACATGAagcaacggaataagaacgtcacccaacgccaggaaggcacgcggaatggtctggattctattctaatgactacacagtgctcgtcgtcggcagcagacgttcccactcttttgctaaatcaccctgttGACATCACTGAACCCTGGTTTAGCCTTTATGTGAGAGTCAGAGTGCAAGTAAATTGCGTACTTCTAACACGTTTTATAAAATAGTTTAATAGTACGCGTGTTTGTATTAGCCTGTTTTAAACACAATTTTGACGTCAAATTCAAGCCAAAACCGGCACAATTTGAGTTTTTGTATTGCTTTAGATTCCCGTAGAAGAATTACCAAACTTTGAAATTAAATTAGACTAAAACATAATTTTGTTTTAGCAGCCTTGCCTCAAACGTTTACTACCTTGTTTTCAAGACGCATTTAATTGAAGGAATAAAAGGTTCTTTCGCTTCGTTGGAATACGCGACTGATGCGTGTATGAGGCGTGCTGTGATTGGCTATTGCTATGTTAGGAGAAAATATATATATTCATTTATTCATTGATAAATTGTATTTATCGTCCGTGCTTGTCTTGTGTTTCAATTTTTGATTCTATAAACTCGTGTGTGTTCAATCTGCTCTCGAATTCTCCCAAACTCATCTCAGTTTGTATGAGCAAACAAAGTAGATCTTTTTTTGTTTATTTTAAATTTAAATTTTTATATCAATGAAAACTGGCTATCACGGTGGCCCACAACTTTCTAGGGGTTATCAAAGACAGACGACTTAAGACGTACATTTAATTTAAAAAAAGAGGCAGTGCTGTAATATCTATGTACCCTAAATGCCCCGTAAATGTAAGCCTTGTCTCAGCTTTGGCGTCTGGTAATTGTAAGCTCTAGTGACTCTAGTTAATTAAACTTACATGCTTGCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5BKS4	ERI1 exoribonuclease 2 OS=Mus musculus OX=10090 GN=Eri2 PE=2 SV=1
Q5HZL1	ERI1 exoribonuclease 2 OS=Xenopus laevis OX=8355 GN=eri2 PE=2 SV=1
A8K979	ERI1 exoribonuclease 2 OS=Homo sapiens OX=9606 GN=ERI2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001739 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929 all species →	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR047201 all species →	Domain	ERI-1-like, DEDDh 3'-5' exonuclease domain	Interproscan
IPR051274 all species →	Family	3'-5' Exoribonuclease	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23044 all species →	3'-5' EXONUCLEASE ERI1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0008.g149.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.