Detailed information of amic_s0008.g87.t2 in Acropora microphthalma

Genomic Location: sc0000008_pilon:1227898...1262105
NR annotation: XP_029203019.1, COP9 signalosome complex subunit 1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q99LD4COP9 signalosome complex subunit 1 OS=Mus musculus OX=10090 GN=Gps1 PE=1 SV=1
P97834COP9 signalosome complex subunit 1 OS=Rattus norvegicus OX=10116 GN=Gps1 PE=1 SV=1
Q6NRT5COP9 signalosome complex subunit 1 OS=Xenopus laevis OX=8355 GN=csn1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005173 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10602
all species →		RPN726S proteasome subunit RPN7RepeatInterproscan
PF01399
all species →		PCIPCI domainDomainInterproscan
PF01120
all species →		Alpha_L_fucosAlpha-L-fucosidaseDomainInterproscan
PF21151
all species →		CSN1_CCOP9 signalosome complex subunit 1, C-terminal helixDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045135
all species →		Domain26S proteasome regulatory subunit Rpn7, N-terminalInterproscan
IPR000717
all species →		DomainProteasome component (PCI) domainInterproscan
IPR000933
all species →		FamilyGlycoside hydrolase, family 29Interproscan
IPR016286
all species →		FamilyAlpha-L-fucosidase, metazoa-typeInterproscan
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR017853
all species →		Homologous_superfamilyGlycoside hydrolase superfamilyInterproscan
IPR019585
all species →		Family26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1Interproscan
IPR048624
all species →		DomainCOP9 signalosome complex subunit 1, C-terminal helixInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14145
all species →		26S PROTESOME SUBUNIT 6Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004560
all species →		Molecular Functionalpha-L-fucosidase activityInterproscan
GO:0005975
all species →		Biological Processcarbohydrate metabolic processInterproscan
GO:0006004
all species →		Biological Processfucose metabolic processInterproscan
GO:0008180
all species →		Cellular ComponentCOP9 signalosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0008.g87.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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