Gene detail

Detailed information of amic_s0009.g129.t1 in Acropora microphthalma

Genomic Location: sc0000009_pilon:1639126...1646982
NR annotation: XP_044179707.1, uncharacterized protein LOC122961180 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0009.g129.t1

AAACATACAGAAGCCATTAATAATGAGGAGAATAGGAGAACGGAAAAGGGGATCATCAATACAGAGTCCCATTGGTCGTGAACGAGCTTGGGAATATTTGTTGCGACGAAAGGCGGAGGGAATAACCGGTGGCATTCATAATCAAAGATCGTTGAATCATCCCGCAGCTGAGAGTTATATTCCTTTGTGTAGCACCGGCGTGGAGGAAACAGAGAGATCTAGAGAGCCATATAAACGAAGTGTAAGTGGTTTTCCCATTGAAGCGTGCGTCTCATCGAGCAGTGCGCATTGTAGTGGGCTGGCCCTTGCCCCAAATGAAGGCTTTTGGTTGGATAGAACAGGAAGTAGGCAAGACCAAAGGAACAGTTCAAGCAGCCATTCAGTATACGGTAAACACACCTCAAAAGGTACCCACAATTATCAAAGAAAAGATTTCATAATGGGATCACTGGAAATCAAGTCAATGCAAATAAATGCAGAGGGCCTTCACTCAAACGTGAATCATGCAAAGCACACCTCTGTAGAGCAACAAACTGAAGAGGCATTAAACTTTACATGCTATTATCACGGACAGAATCACCTGAAAAACTCCTTTCAGCAGTTGCCCTGTCACCAAAACTGGATACCAAGAGTCTCAAATAAGAGGATTAACAGAGACCCAACTCCTATGGAAGACTCAAACCAGTATGATGAAAATCCACAAGATGCATCAATGAAAACAAGCCAAGGATGTTTTTCTGGAAGTCATCCTTCAGGTCTACCATTAGCCCATGGAACATTAAAACGTTCTAAAGATGTGAGTTTTAAACCCTCCAAGCAGATCCCTGTCATGAGCAGCTGTAACAAATATTTAACATTAACTCACCTGTTGCCATACCCAGCAGAAGGAGTCGAAGTGGTGTACACTACAGACCCAATTGAAGTAGAGGCATGGTTAAGGAATAATGTCATTGATTGCTCTGCGCAGGCAGTTGGGTTAGACATTGAGTGGAAACCTCAGTTTAAAAGGAAAAAAGATGGGGGTGTTGAGAATAAGACTGCCGTTCTGCAGTTAGCCATAGAAAGCTCAAGTCTTGTTTTTCAGCTTTATAACCTTGGGAGACCCCCAAATGTTCTGGTATCAGTTCTGCGAGATGAGAGGATCTTAAAAGTTGGAAGTGGGATTTTACAGGATGTGACCAAACTGAAGAAAGATACTGGATTGAAATGTATTGGGCTGGTGGATACCCAAAAACTGGCAAAAGAAGTTGGCATGTTAGAATCTCAGAAACTTGGACTGAAGGCACTTGCTAAATATTTACTTGGAATTGAACTTGAAAAGCCAAAGTCAGTGACCATGAGTAACTGGGAAAATTTTCCCCTAACTGTGAAACAGATCCACTACGCTGCCTTGGATGCATGGATTGGATTAAAAATTTACCGATCAATGAAGGCTATGCAAGGAAAGAGTACATGTAAGTCTTTAGAGGGAAGCAATTTGGCAAACTGTGAAGAAGCCACAATGAATGAGAATCCACTTCCTTGCCATGTCTGTGGAAAAAAGTTCAAGACTAGCAGTGCCCTTCCTGAACATTTGAAAGTTCATCCCAAGTGCGGATGTGGTCAATATTTTGTGGATAAAATAAGCAAAAAGCACAAGAAAAAATGTCCATTTTTGAATCCTTTTGCTGCCATATCTGTTGGGTAGAATATGTGATTATtaacaactgcattcgagctgagtggaaggtgggtgcccgagatgtccaggggcctccaccgtgatcagccagcccccagtaagacgctcccatggctagcaatccccgcaacccagccatgagcccccacacacagggacatccaggcacccgtcacactgtgataacagtggaaagagaggaaaacaaaaaacacaaaaaaaagcaaaggggggaatggaagggagacagaaaactaagaaaggactaccgctgaagaaaagacagccgcttatagaatacaaagagtgtactaggctcttcccaatgtggttccaaatagcagctactctgagccgcgtgacctacatgaacctgagcatgtgcgcctgagactgctgactgctaagcaacctctccatcctggaccccaatgcacaagaaaaccagcatctctttgttgttaactaggttaaattgcatttaaccacatGCAGTGCACTTTCTGAACACTTGAAAGTTCATCCCAAGTACCGATGTGGTTGATATTTTGTGGATAAAATAAGCAAAAAGCACAAGAAAAAATGTCCATTGTTGAATTCTTTTTGCTGCCATGTCTGTGGGAGAAAGGTTATGAGTAACAGTGAACTTTCTGAATACTTGAAAGTTCATCCTAAGTGCCAATGTGGTCAATACTTAGCGCCAAAGATATTCAAGGAGCATAGTATGAAAAGCTCAAAGCTGAAACAAAGGACTGAAACCATTTTGAAGCATATAAAAATAAATTCAGATGAGCCAGGCCTGTGTAATGCATGTGGGAAGAAGTGGGCGACATTAGAAAGCCTAACAAGCCACATCAGAAAAGCTGGTCATGTCTTGTGCCCCTTTTGCAGAGATTTATTACCCTATGATGCAAGCCATTCACATATTTTGAAATGCCAGGTCTTGACTGGTGAATAGTAGGAGCAATTTTTGAATTGCTGGATCAAAGCAGAAGACTGTTATTATTATCTTGTCTACTTAAACATTTGCTATCATTTAAGAAGGGTATGTTGGGTGTGTTCTCTGTATTTATTGTTATGAAAATGGTTTGTGTTGGCTGTGAATTTTATTTAGAGAAGCACTTTACTTTCAATGCTTTTTCAAACCCATTCAGTTTTGAAGGGTGGATCAGAAATTTTGGTTTTAAAATTGAGAGGTAATACTGAACTTAAGGAGATTTCAATAATGTTAAACTGCCGATAATATTTATAAAACAGTTGTTGTAATTATCTTTGGTACGATCATTCTGTGTTACAAAGTTTAGTTGTTTGCTGTATCTTTTTCACTTTACAGACGTACTTTTGAAGCATAGAGAAGTGAATATAAGCTATAAAAATGAAACATCCTTCTTGCATCATTCATTTTGAAGTTTAAGAACTGTGGGAAATTAGAATTTTCAACCACGAGAATCCTCTTTTCTCGCCGCCATCTTGGAATATTATTGGTAACGAGTACTTGCGACAAAAACTTTCAAAATGGGTCGTATGCACGCTCCAGGGAAAGGTATTTCTGCTTCAGCTTTGCCGTACCGCCGAAGTGTCCCGACGTGGCTCAAGTTGACGTCAGATGATGTTAAAGAACAAATATACAAATTAGCCAAGAAGGGCCTGACACCATCACAGATAGGTGTGATCTTGCGGGACTCACATGGAGTGGCACAAGTTCGCTATGTAACTGGAAACAAGATCCTTAGGATTCTGAAGGCGAAAGGGTTAGCAGGAAATCTTCCTGAAGATCTCTATTTCCTTATCAAGAAGGCAGTTTCTGTTCGAAAACATCTTGAAAAGCACAGGAAGGACAAGGATTCCAAGTTTAGGCTTATCCTCATTGAGAGCAGGATTCATCGCTTGGCCCGTTACTACAAGACCAAAAGACTTTTGCCTCCAAACTGGAAATATGAATCATCTACTGCCTCTGCCTTGGTTGCATAAATGATGTAAAGGTTGATTTCAATAAAATACTAATGATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q84LH3	3'-5' exonuclease OS=Arabidopsis thaliana OX=3702 GN=WEX PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003171 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01612 all species →	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR002562 all species →	Domain	3'-5' exonuclease domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR051132 all species →	Family	3'-5' Exonuclease domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13620 all species →	3-5 EXONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0009.g129.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.