Gene detail

Detailed information of amic_s0010.g113.t1 in Acropora microphthalma

Genomic Location: sc0000010_pilon:1396080...1404492
NR annotation: XP_029189476.2, zinc finger protein 76-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0010.g113.t1

GACTTAGCAAGATTACAAGTTTTCTTTAGTTTGAAGCAGTTCGCAAATGGTGAAAACAAGTTAACAAAGAAAAATCCAAATAATGTCAAGTGAGGAAGAAGCCACAGCAGCCAATGTGCTGTCACAAATGTCACAGATCCAACAGATCAGCTGTGAGACAATTGAGGCCACTGTAATTAATGTGGGACATCACTGTGATGTAGAAACCACAGCCACTCAAGTTATGGAAATACAAATGCAGGGAGAGGTTCCTGTAGTGGAAGGCAGTGAAGTTCTTCAACAGGTGCATGCAGTGACATCTGCTGAGAAGGTGCAGCAACCAGAAGCTCCAGTTGTTGGTGGTAATGAAGCTCAGCTTGAATCTGGTCAAGTGGCTATAACTATTCCAGTGACAACGGCACCCTCCCCAGTTGTTCCAACAAGAATTACTACAGCAGGAGGAAGGGTGTATGCTTGTGAATACTGTGGCAAGGAGTTTAACAAATCATACAACCTGAAGACACATATACGTGTTCACACTGGTGAAAGACCTTACCAGTGTGAGGAGTGTGGACATGGATTTGCAAATTTGGGTGATCTAAAGAGACATGCACGAACACATACTGGAGAAAAACCATTTAAATGTGAATACTGTGGCAAAGTATTCTCAGATTTTGGAAGTCATAAGCGTCATCTACGCCTTCACACAGGTTTCAAACCGTTTCGGTGCGAACACTGTGAGAGGGAATTCACTCGTTTAGACAGCTACAAGAACCACATACGGCTTCACACTGGTGATCGACCATACAAATGTGACACATGTGCAAAGGAGTTCAACTATCTCACTACATATAAACGCCATTTAAATATACACAAAGGAGAGAAGCCATTTGCCTGTGAGCATTGTGACAAGAAGTTCACCCGCCTTAACTATCTGAAAAACCATCTCAACACTCATGCCAAACACTCCAGTCAAGAAAGCCAGACTGACTTCAAGTTTGATAGCAATAACACTGATGCTACCATGAATGAAGATTGTCACGAAACGATGGGTGCTATGGCAGAGGAGACTGTCGCTGCCCACAGTATAAGAAATGAGAGCAAAAATGATGTTGAGCTTGATAAAGAAGATGAACGAGAGCTTGGTTCAGCCACGGAAAAAGCACAGGGGGATGATATCCCAGATGCAACCAAGCCATCAGAAACGAAAGTACTGGATGCATCTCTTCTACAACAAGTTACTCAGGTTTTGGGGGAAATTGTTCCTCACAATCTAAGTGCAGAGCTTACAGAAGGAAATGGGGGACCCCAGATTGTAGTCCAAGGTGCAGACCATGAAGGAAGTGAGTTTAAAATCACCCTTGCGCAGCAGTTACTTCTTGCTCAACATCTACTGAACCAGGTACAGACACAGAGGCATGGTCAGGGAGGAAGTTGTAGTGAGGATGGTGAAGCTTGCACGGAACAAGCACAGATTGCAACCGTATCCATTCCTGAGCTCACACCTGAATTAGCAGAGCAGATTGTCAGTCAAGCAGCAGCGCAGCAAGCTGCTGGAGAACATACCACCATACAGACCAGTGCTGGGGAGGGAATCTTGATACAGAGTTCCCCAGGGGTGTTGCATGTCCCCGGAGAGAGCACTTCTCAAGGAACTAGGCAAACAGGAATGGTTATTGGAACTGAGGTTATGGTTCATGATGCAAGTGAGGGTGAAGATACAGAGATGGTGACGGAGCATGTATTACAAGAGAGTACCGCCGTCCCTGTGACATCCGAACATGGTGTGCCCCTGGTCGACAGTGAAGCAGTTTATGTTGCTATTGACCCCAGTCAAGGAGATGTCCAGCAAATTTTAGGCCAGATCCAAGCTATCACATCATCCCAATTACAACGGGCGCAAGCCAGTGACCAAAACGATAGCAACTAAGAAGAAAAGCAATGGAAGCATTAAATCTCTTAAGTTTGATGTAAAGATGTTTCTCAAGAAGATGTCACTTAAAGTAATCAATTGAATTGTTGTGTAGTGTATTCTTTTGTGTAATGACTTTCAGTTCATCCATCTCTGAAATGTCTGTACTATGAGCCAACATGCGTCCTCGCATAGCCAAGCTAAGGGCAGTTTGCCGGGACGGGACGAAAAAATTGCGGGCAAATTTGACCCTGACCCTTGAGAGTTCCAGGATTTCTTCCACAGACATCTGCAGAATTATTGCGAAGTGGAATAGGAACACAACTAACCCATATCAAGTTTATGAGCTTAGGGTTTTATATCTTTTTTTTTTTTGCACTGTATACCGTGAGCAGGTGATTATAACTTCTAATTTTAAGTCACGACGAGTTCACAAACCGAGTTAATTTTGGACTTCTTTCCAGCTAATCAGAAGTCTTGCATAAACCATTAATTCTCAAAGGGTCGGTAAAGCCAATCATGTGAACCGGAACCAGTTTAAATATATCCCGGTCTGTAATAACTGTCTCAGTATAAGAGCTGTGCCCACCAAATCACGTACCCTCGTGCCTTTTTTGGTCAGTGAGTGAGAGACACTGTGATAATGGTGcctttttcccagaaaacgtggggttccagtcttaatgcgcatgcttgaaattagaacggagataagtggttgtctcacaatggcgggttgaaagtctaaaagaaagaTTAATTCGGTCTTACTGAAAAAAGAAAACTGCATTTTTTTTTTCACAATAAATTGATTAAGTGACG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P60319	Probable transcription factor Ken (Fragment) OS=Drosophila yakuba OX=7245 GN=ken PE=2 SV=1
Q292R5	Transcription factor Ken OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=ken PE=3 SV=2
O77459	Transcription factor Ken OS=Drosophila melanogaster OX=7227 GN=ken PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009302 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23235 all species →	KRUEPPEL-LIKE TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0010.g113.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.