Gene detail

Detailed information of amic_s0010.g116.t1 in Acropora microphthalma

Genomic Location: sc0000010_pilon:1414833...1419593
NR annotation: XP_015779311.1, PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC2-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32PE0	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos taurus OX=9913 GN=POLR2F PE=1 SV=1
P61217	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus OX=10029 GN=POLR2F PE=2 SV=1
P61218	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Homo sapiens OX=9606 GN=POLR2F PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008024 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01192 all species →	RNA_pol_Rpb6	RNA polymerase Rpb6	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036161 all species →	Homologous_superfamily	RPB6/omega subunit-like superfamily	Interproscan
IPR028363 all species →	Family	DNA-directed RNA polymerase, subunit RPB6	Interproscan
IPR006110 all species →	Family	RNA polymerase, subunit omega/Rpo6/RPB6	Interproscan
IPR006111 all species →	Family	Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunit	Interproscan
IPR020708 all species →	Conserved_site	DNA-directed RNA polymerase, 14-18kDa subunit, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47227 all species →	DNA-DIRECTED RNA POLYMERASE SUBUNIT K	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001055 all species →	Molecular Function	RNA polymerase II activity	Interproscan
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006360 all species →	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0042797 all species →	Biological Process	tRNA transcription by RNA polymerase III	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03014	RPABC2, RPB6, POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.