Gene detail

Detailed information of amic_s0010.g153.t1 in Acropora microphthalma

Genomic Location: sc0000010_pilon:1870668...1884757
NR annotation: XP_029198559.2, fizzy-related protein homolog [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0010.g153.t1

AGTCCCCTCATTTTTTTCTTAGTTTGAAGTCCCGGATGTAGATTCAAATAGCGTCGAACAGTGTAGCAAATTAGTCCGTTTGTGTTTGAAAATTCCAGCTTTGAATAACAACAGTAGTACACGTGTACCGATAAACTCCTCGCACTTTTGCTTATCGGTCTGTATTTTACTGGAATTGAACACCTGTGCTTCTTTTTAACAACCTTGCACAAAGGAGAGAGCATGATTGGACTTCATTAATCCTCATTGGAACGTTCTTAACTTCAAGCACACAAACGCAGGAGGAAAAGAAAGTTGACTTCCGACAAGTTTGTTTTGAAACTGCTGAATTTCAATTCTTTACATCTCAACGTGGCTAGAAGAGACCAATTTTGGTGAAAAACTATGTTATCCAGACATATGACGGGGATTGTTGTTTTGGGTCTCCACTAGCTCTGTGTGACGTTTGCTATGCTTTTTGGTTTGTTGATGAAATCCTCGGTTCAGAACTGGATATAACACCAATTCTTATGCAGATTTATGTCCCGATTCCTCATAGCTGGTGTTCAGAAAGATTAATTCAAGTTCTTGGCCTTGGCTGTAAACATCTTTTGAAAAAATATCCAACTCCTTCCTTTCAAAACACGGATTCTAGTTTTGTTGTTCGCCACATGTTCGTGAATATCATTGATTTCTGTGGAATTTCACAAAGGTTTACTCTAGAGAGAATAAAACGGTGATCTGTTCCAAAGCAAGAAACCAGGTGAAGATGGATCCAGAATATGGAAGAAGACTTCTTCGCCAACAAAATGGACGAAGTCCCTTAAATAATTCTCCCTGTCTGACTGGAGGAAGACATTTTAGTCCTGTAAGTTCCCCAAGTCGAGATAAATATGGAGACAGGTTTATTCCAAGTCGAACCAGTCCAGCATGGCATCTTAATTTTAATCTTGTTCAGGAAAATAGTGAGCCAATGAAGAATGGAGGAGTAACTCGGGATGCCAGTGTGGATTCTAAAGAGGGTATGGCTTATCAGTGCCTTTTAAGGAATGAGTTGCTTGGTGCTGAAATTGAAGATCTCAAGGATGTTCCACAGGAGGAAAGAAGAGCATTGTTCAGCAACAGTAACCATGTACATAGTATATTCCAGTATCAGGTGAAGCGAAGTAAACAGGATGACACTGAATCAGTTGCCTCTTATTCTCTTTCACCTATTGGGAAAAAAAGCCAAAGACTTTTACGGTCACCGAGAAAGTCAACGAGGAAAATTTCAAAGATACCATTTAAAGTTTTAGATGCCCCTGAATTACAGGATGACTTTTATCTTAATCTTGTGGACTGGTCAGGGCAAAATATTTTGAGTGTTGGCCTAGGAACATGTGTTTATCTCTGGAGTGCATGTACAAGTCAGGTTACAAAACTTTGTGATCTGGCAGCAGACGGGGATTCAGTAACATCAGTGTCTTGGTCAGAAAGAAGTGGCCTTGTAGCTGTAGGTACTCATAAGGGTCTTGTTCAAATATGGGATGCTGGTGCACAGAAAAGGGTGTCCACAATAGAAGGACATACTGCTAGAGTAGGAGCTCTTGCATGGAATGGGGACATGCTGTCATCTGGTAGTAGAGATCGGCTCATTCTTCAACGTGATGTTAGAACGCCGAATCCAGTGGAGAGAAGATTAATTGGCCACAGGCAAGAGGTGTGTGGACTTAAGTGGTCCCCAGATCATCAGCATCTTGCATCAGGAGGCAATGATAACAAGCTGTTAGTGTGGAACCTTTCAAATTTATCCCCTGAGCAACAGTACGGTGAACACTCGGCGGCTGTGAAAGCTATTGCTTGGTCTCCTCATCAGCATGGCTTGCTCTCTTCTGGGGGAGGGACAGCTGACAGGTGTATTCGATTCTGGAATACATTAACCGGACAGCCTCTCCAATGTGTAGACACAGGATCACAGGTTTGCAACTTGGCGTGGTCAAAGCATTCTAACGAGCTGGTTAGTACACACGGCTATTCGCAGAACCAGATCTTGGTTTGGAAATATCCATCGTTGACTCAAGTGGCCAAATTGACTGGACACTCGTTTCGCGTCTTGTACTTGGCCGTATCACCTGATGGGGAAGCCATTGTCACCGGTGCTGGAGATGAGACGCTAAGATTCTGGAATGTTTTCAACAAAGCTCGCTCCCACAAGGAATCAAAATCCGAGCTAAACCTTTTTTCCAGAAtaagataaatattgtcatattagtatatattaataatcatgattattttaatTAACTTTAAATTGATGCACGCAAACAATGTAACCCAATGATTATATGTCGCTCAGCTCAAGCCATATCTACGATGTCTTGTTGCCGTTCTGCTTTTATCTCCCTGTTACCGTTTGGAAAACGACAGCGTATGATCATGATGAATTGATTGTTATGAGGAACAGTGACCGCTTTGTCCTGTGCTCTTTTTAACTCCTTCTCGCTTTCTCGACATTGATTGCAAAATAGAGAGAACCCAAGGTTCCACTTTGTAACCTGAGTAACGAATATCGAAAGAGAACAACTGACTCTTGTTTTAAGGTATATGCCAATTTAGTGAAGAGCGCCCGACTTTGCGTTACATGCTTGCATACCATGAATACATCACGTACATATCTGGTTATGCCTGTAATCATGTTGTTACATACACATATTGCAAGGAATACAATCACGCCGTCTCATACTGCAACAAGTAACGTGATGTCTTTGTTGTTGCTGTTGTTTTTCGTGATTTACACGTCCAAACCGCACGGGTCAGTTTAAATCGACTGAAAACTCTGAGCTCATGTGCAATAACAAGATGTTGGCACTAGGGAGAGCGGGATAAACAAAACCTAAaagtttgcacatttcattcccgctctcgacaaatctgtgacgtgaaatgaatgtttctcaagttttacagagaacgtaaacacagccgcgaatttgaatttcttctctagctttgacactgcacctctaaattcacttcctgagtagttccaccagctttcaaaagttaaacaaacggacataatgacgaaaaatatgggcaggcttcaacttgcaattttgaacgacgttttcgcttgcgtcgcgttgaacttcttagagagcttcagactctaggatgagaaagaatacgagatttgactgcccgtttttagcaaaaatacttgagaaatttataacacacgattaatcttacattttgttagcagtgtagattgctcagttattcttgttgctggtaactgagcccttttgcagatcgaaaaatggcaaaactactaccgtgttcttgacttgttttggcccgacaacatttttgcaaaacctcgtactaaaatgacgacggtatcacgcttttcccgccaaaatgacgttggtttgcgcgcgctcaatgtttttctataaggaaatctccattctcgtccccagagccactcgttctcaggcttaaaatGTCGTTACGAGTCGGTTTTTTCTCCGAGCACGTGACCAAAAGAAACGGAAGCTCTAGGGACGAGAATGGGaaatctcgtactcttcgtcgttttcgtcctagaatctaaagctctctCccacgacggctgctgcaacggaaatgtcccctgaatttgcgttaggttaatttattctaaaaaggtcgcgttttacaaaatagacgttctcgttctttctacgacgtgaaatgacctgttgttcagttgtgtggacgacgtgagcatatgatgacaaatgttcaatttgtcttctcctgtcccaagcgctggttccaaattaattccaggatatttagaacgcattttttaagcaaaataagtttgaataattgaaaaatgattgcagaaacgcgaagtcacattttcagatgacgttctcgctttcgtcgacgtcgtgtttgctttaagcgccctaTTAaaatttcacgtcttcgtttggcagactacgtcatagaattgttctaaagtgcggttgtcaTTTCTGAACTCCGTAGATTCGGTGACCCTGGCCAATCACACAACGCGTAACATCTGGAAGTTTCGATGAAATTTCGCCCTGCGACCTTTCGATGCACTTGGCACTAATTAGATTATCCGGGTTGCTGGATACGTCTTTTTACTGCGGATTTCAATAACCCTTAACAAGTCTTGTACAAATGAAAAGTATCATAAATAGTCCTTAACCCGTCATTCTGAGGGTTCTGTATTAATTCTCACACTCGAAACACCCACAAAATGTTTGGTCATTTTCACACTTAGCTCCGAATTTTCAGGAAAAAAGGTCAAACTAGTTAAGAAAGATTCCTTGTAAGTTTCGGTTTAACTAAAGCTGAAATAGAACCCACACACTGGGTTTTCAATAAAACTATTACTTTGGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R1K5	Fizzy-related protein homolog OS=Mus musculus OX=10090 GN=Fzr1 PE=1 SV=1
Q9UM11	Fizzy-related protein homolog OS=Homo sapiens OX=9606 GN=FZR1 PE=1 SV=2
Q9M7I2	B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001242 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR033010 all species →	Family	WD repeat Cdc20/Fizzy	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19918 all species →	CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005680 all species →	Cellular Component	anaphase-promoting complex	Interproscan
GO:0010997 all species →	Molecular Function	anaphase-promoting complex binding	Interproscan
GO:0031145 all species →	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0097027 all species →	Molecular Function	ubiquitin-protein transferase activator activity	Interproscan
GO:1904668 all species →	Biological Process	positive regulation of ubiquitin protein ligase activity	Interproscan
GO:1905786 all species →	Biological Process	positive regulation of anaphase-promoting complex-dependent catabolic process	Interproscan
GO:1990757 all species →	Molecular Function	ubiquitin ligase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03364	CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.