Gene detail

Detailed information of amic_s0010.g158.t1 in Acropora microphthalma

Genomic Location: sc0000010_pilon:1916478...1931686
NR annotation: XP_015759692.1, PREDICTED: LOW QUALITY PROTEIN: histone-arginine methyltransferase CARMER-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0010.g158.t1

CAGAGAGAGTCTGGACTCGGCTTTTAAACACGAGCCGGCGATAATTTTTCTTGTGTGGAATACCGCTCGACAGAGGATGAAGAAAGTAACTTGAGTGTCAGTCAACCGCACGTGGATAAGGCTTGTTTTTTTTGACAGTTTATTTTCGTTACGCCACAAAATTCTCATGGACCAACAAATGAGTGCAAGAACAGGCGCAAATTCGCAGTCGTTTCGAAACTGTAGGCTGCAGATTGTAAAAGGGGACCACGCGCTTTCCACGCAAGACGCCGGAGATTGCGTGGTTGATGTTTTCGAGGACAGCAAGAACTCGCTTGATATTCGCATTCGTAGCGGCAACCAATATTTGCCAAGTTTCAAAGTGACGAAGGACACTGATCATTGTCAGTTGGGACGACTTCGCTATGTCATTGACTTACCTCAACAGAACTCAAGTGTTCTTCTAAACTTCACACACAGGGAAGATGTGATTGATTTCAAGGATCTCTTGAACACTGCAACTGGCAGGTTAAAGAAACATTCAGTTTTCAATGAGAGGACCGAAAAAGCTTCAGCCATTCAATATTTTCAGTTTTATGGATATCTATCACAGCAACAGAACATGATGCAGGATTTTATCAGAACTTCGACATATCAAAGAGCAATGCTTCAGAACCACACAGATTTCCAGGACAAGGTCGTGATTGACGTTGGTGCCGGATCGGGCATTTTGTCGTTTTTTGCTGTCCAAGCCGGTGCTAAAAAAGTGTATGCTATAGAAGCCAGCTCAATGGCATCTCATGCGGAGGCTTTGGTTGAGCACAATAAATTATCTGACAAAGTCATTGTAATTCCAGGAAAAGTTGAAGAGGTTGAAATTCCAGAGCTAGTAGATGTTATTATCTCTGAGCCCATGGGTTACATGCTTTACAATGAACGGATGCTTGAAAGTTATCTCCATGCAAAAAAATGGCTGAAACCAAATGGCAAAATGTTCCCAACTACCGGAGATCTCCATGTGGCCCCATTTTTTGATGATGCTCTCTATATGGAACATTTCTCAAAAGCTAATTTCTGGTATCAAAATTCATTTTATGGAGTTGATCTGTCAAATCTAAGAGAATCAGCTCTTGAGGAATACTTCAGACAGCCAATAGTTGATACATTTGATGTACGCATTCTGATGGCAAAACCTGTTACACATTCTGTGAACTTTCTTTCAGCAGCTGAAGATGATTTACATAGAATAGAAATTCCTCTGCACTATACAGTGCACACTGCTGGATCTGTTCATGGCCTTGCTTTCTGGTTTGATGTGTTGTTTCAAGGGAGCAATGTGCCTGTGTGGCTGTCCACTGCACCTCAAGAACCACTCACACATTGGTATCAGGTTCGGTGTCTACTTCCAACTCCAATATTTGTTAAGGTTGGACAAGCTTTATCTGGGAAGGTGCTTCTTATATCAAACAGAAGACAAAGTTATGATGTTGAGATAGAGTTGATGGTCGATGGAACAGGAATCAAATCCAAAAATACACTAGATCTCAAAAATCCGTATTTTCGCTATACTGGAACACAAACACCAATACCCGCTGGTACCAACACAGTATCACCAACAGAACTTTACTGGAATATGGCCACGTCATCTACATCTGCTGTGAATGAAAATGGAACTCTTGATGGATCATGTGGCAATATGATGACAAATGGTCTAGTTGTTAATGATCCTGCCACTTACGCTGGAGCTGGGGGAATTCTAGGGGCTTCACCGTATGCCCTTGGGGGCATCTCAAGTGGGATGCCCATCGTCAGTGCTGTCCCTAATGCCTCAACCCTAGAGGGAAGCTCCAGTCATTATGTCAGCAACCGCTATGTGGTGGGCAACCAAGCAGCTATTATCCAAGGCTACAGTGGCACCAACTGTGGGGAGTATTCCAACAGTAAAGGAGCCTATCACTCCATGGTGTACTCAAGATGAATGTTATGGCTTCACTGTTCTTTCTTTGTGGTACACATTCTGTCAGCAATATGAAAAGGCTGCCTGCTCCACCACTTCTCAGTTTAAAGTTGAACTGCCTTGTTCAGCATAGCAAGGAGAATTACAGGAAAGTGGTGCTCAGTAGCTTCCATTTCAAAGGCCAACAGCTCAGCAATGATATAATTTTTAGAAAAAACACTTCCTCGTCTTTCACTGCATGTGTCAATATTATTGTAAAATTTAAATGACTCCCAGACCTAAAAGGTGCTACAGTCTTAGACTAAATGTCTTGACTTAATGCCTTGACTTAATGCCTTGTGTGCTGGGATGAACCAGTGTTGGATGGGTTGATGTTTTGCTCTAGAATAATTTGGTTACTTTTTAGCAAAGCTACCATTTGTACATTAATTCTCATATATTTGGAGCTCTGTCTCGGTGAAATATTTCCAGTGGGGCTTAATGTCTTAAAGAACCTTGCTGGCTGGCATTATCATTGTTGACATGTCCAGAAAGGTACTGATGCCTCACTCAGTTGCCCAGAAGTTGTTGTAGGATGTTCTGAACACTCAAAAGGAGCAAGACAGTTTTCACATTTCACTTTAAAATTTAGTAATTGGAAGAAAAGAATGTACAATAATAAGAGCCTTTCATCTGTGCCCACAAACCCCTTACACAGTCACTGATAGACAGTTCTATTCATTAATGGTTCCTTCTGTTCAGCAGCATTCTTTGCCCTCATTCGAGTCAAATGCAATTTCAGTGCAATGCATGTTTATTCATTTTTGCATGCATTTACTTTGCAGATGTTTTGCATGCTCGCAACTTGCATTTCAAGCTTATAACTGTACAACTGTTGCTTTCAATTATATTCTCATCAACTGAATCTGAATTATCAGGCATAAGGGAGAAATAGCACACTTTCACGAAACATACCAAGTCATATTTTTGTATGAAATTACCATTATTCAGCGATTTGAATGTTGTTGTACCAGTTTTCTCTTGTAATAATTATAAACAAAATAATGATTGGTTGTCTAGCCTTAAACCAGTCTGCCAAATCTCTGATAGTTTCACCTGCTTTAGATTGCTTGAAAAGACTTGATATTTTTCATGTGAAAAGAAAAAGTATTTTAATTATTGTATTCTTTTCTTCCCTTTTTGTTTCTTTTTTCATGGTTATTGTGGGGTTTGATTTTTTTATTATTTTTTTTATTACACTTAAAAATATTAGAAAATTGTTTTGGATAAATCAAGTTTTTTCCAGGTTGTGACATGATTTTAAAACTGAATAATTTGTACATATTAAGTCAATAAGGGTTAACTCTTGGAAATATTTTAGATTATCAGCTAAACATTACATATTAAATTATTGTAAGCTGGTAGGTCTCATTTTAGTCAGTGTTACTTGTGCAACGAAGTAAGTCAAGGCTTGTTCTTTGTGGTCAGCACTTTTGCTCAGCGTTGACAGTGTATACCTTCTGCTACTCTGGGTGAGGTTTGATCACCAGAATTGAAAGCACAAGAGGATTGGTTCACTAAGTTGCTCTGAGGGTTTTTTTTTTTTAATGCAACATACGTTCTTCATTTAACTAATTGTGTGGTGATAGGTGTCTAGAATAAGAtgatgaaaaggta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DC04	Histone-arginine methyltransferase CARM1 OS=Danio rerio OX=7955 GN=carm1 PE=2 SV=1
Q9WVG6	Histone-arginine methyltransferase CARM1 OS=Mus musculus OX=10090 GN=Carm1 PE=1 SV=2
Q86X55	Histone-arginine methyltransferase CARM1 OS=Homo sapiens OX=9606 GN=CARM1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004745 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11531 all species →	CARM1	Coactivator-associated arginine methyltransferase 1 N terminal	Domain	Interproscan
PF06325 all species →	PrmA	Ribosomal protein L11 methyltransferase (PrmA)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025799 all species →	Family	Protein arginine N-methyltransferase	Interproscan
IPR020989 all species →	Domain	Histone-arginine methyltransferase CARM1, N-terminal	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11006 all species →	PROTEIN ARGININE N-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016274 all species →	Molecular Function	protein-arginine N-methyltransferase activity	Interproscan
GO:0018216 all species →	Biological Process	peptidyl-arginine methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05931	CARM1, PRMT4; type I protein arginine methyltransferase	EC:2.1.1.319	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.