Detailed information of amic_s0010.g164.t2 in Acropora microphthalma

Genomic Location: sc0000010_pilon:2016338...2028667
NR annotation: XP_015759684.1, PREDICTED: gamma-aminobutyric acid receptor subunit beta-2-like isoform X2 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P08220Gamma-aminobutyric acid receptor subunit beta-1 OS=Bos taurus OX=9913 GN=GABRB1 PE=2 SV=1
P18505Gamma-aminobutyric acid receptor subunit beta-1 OS=Homo sapiens OX=9606 GN=GABRB1 PE=1 SV=2
P50571Gamma-aminobutyric acid receptor subunit beta-1 OS=Mus musculus OX=10090 GN=Gabrb1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001731 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02932
all species →		Neur_chan_membNeurotransmitter-gated ion-channel transmembrane regionFamilyInterproscan
PF02931
all species →		Neur_chan_LBDNeurotransmitter-gated ion-channel ligand binding domainFamilyInterproscan
PF01019
all species →		G_glu_transpeptGamma-glutamyltranspeptidaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043137
all species →		Homologous_superfamilyGamma-glutamyltranspeptidase, small subunitInterproscan
IPR036734
all species →		Homologous_superfamilyNeurotransmitter-gated ion-channel ligand-binding domain superfamilyInterproscan
IPR038050
all species →		Homologous_superfamilyNeuronal acetylcholine receptorInterproscan
IPR036719
all species →		Homologous_superfamilyNeurotransmitter-gated ion-channel transmembrane domain superfamilyInterproscan
IPR006029
all species →		DomainNeurotransmitter-gated ion-channel transmembrane domainInterproscan
IPR006202
all species →		DomainNeurotransmitter-gated ion-channel ligand-binding domainInterproscan
IPR029055
all species →		Homologous_superfamilyNucleophile aminohydrolases, N-terminalInterproscan
IPR000101
all species →		FamilyGamma-glutamyltranspeptidaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11686
all species →		GAMMA GLUTAMYL TRANSPEPTIDASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005230
all species →		Molecular Functionextracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0006811
all species →		Biological Processmonoatomic ion transportInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0006751
all species →		Biological Processglutathione catabolic processInterproscan
GO:0036374
all species →		Molecular Functionglutathione hydrolase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0010.g164.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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