Detailed information of amic_s0010.g168.t1 in Acropora microphthalma

Genomic Location: sc0000010_pilon:2104929...2106177
NR annotation: XP_029182465.2, transcription elongation factor A N-terminal and central domain-containing protein 2-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B0UYI1Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Danio rerio OX=7955 GN=tceanc2 PE=3 SV=1
Q5XIC7Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Tceanc2 PE=2 SV=1
Q8R2M0Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Mus musculus OX=10090 GN=Tceanc2 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009250 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07500
all species →		TFIIS_MTranscription factor S-II (TFIIS), central domainDomainInterproscan
PF08711
all species →		Med26TFIIS helical bundle-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035441
all species →		Homologous_superfamilyTFIIS/LEDGF domain superfamilyInterproscan
IPR003617
all species →		DomainTranscription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeInterproscan
IPR017923
all species →		DomainTranscription factor IIS, N-terminalInterproscan
IPR003618
all species →		DomainTranscription elongation factor S-II, central domainInterproscan
IPR036575
all species →		Homologous_superfamilyTranscription elongation factor S-II, central domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11477
all species →		TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006351
all species →		Biological ProcessDNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0010.g168.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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