Gene detail

Detailed information of amic_s0010.g6.t2 in Acropora microphthalma

Genomic Location: sc0000010_pilon:140116...149185
NR annotation: XP_044163941.1, receptor-type tyrosine-protein phosphatase delta-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0010.g6.t2

ATGGCACTAAACGCTTCTCCCTCTAATGTAACCGGACATACTCTAAGCTCTACCAGTATTTTGGTCAGCTGGGGACAAGTCCCTTTTCCAGATCAAAATGGTGTTATCTTGAGTTATACAGTTACCTACAGAGCGTTATTACCTAGTGGGTCTTCACAAACAAAGAATGTCACTGCGCCAGCAAATCATACCACACTGACCGCTCTCAACGAATACACTAACTACAGCATCACAGTGTTTGCGTCAACGTCAAAGGGAGGAGGAAATCAAAGTACACCTATTGTGGTCATCACAGATGAAGACAAGCCGAATGCTCCCCCATCTAATGTGATTGGACATAATGCAAGCTCTACCAGTATTTTCGTCAGCTGGGGAGACGTCCCTTTTTCAGATCAAAATGGTGTTATCTTGAGTTATACAGTTACCTACAGAGCGTTACCTAGTGGCTCTTCACAAACAAAGAATGTGACTGCGCCAGCAAATCAAACCACACTGACCGGTCTCAACGAATACACTAACTATAGCATCACATTGTTTGCGTCAACATCAAAGGGACGAGGAAATCAAAGTACACCTATTGTGGTCATTACAGATGAAGACAGGCCTAATGCTGCCCCTGCTAATGTCAGTGGACGTGCTATAAACTCTACAAGTATTTTAGTCAGCTGGGGAGAAGTCCCTTTTCCAGATCAAAATGGTGTCATACTGAGTTACACAGTTACCTACAGATGGCAACCTAGTGGCCCTGCACAAACACATAATGTGACTGCACCAGCAAGTCAAATCACACTGACCGGTCTAAACGAATACACTAACTACAGAATCACAGTGTTTGCTTCGACATCAAAGGGAGAAGGAAATAAAAGTACACCTTTTGTGGTCATCACAGATGAAGACGCGCCAAGTGCAGCACCTGCGTCTCTCCAGGGACACAACAAAAGCTCTACCAGTATTTTCGTTACCTGGGGACAAGTCCCTCCCTCAGAGCAAAATGGTGTCATATTAAATTACACGGTTCGCTACAAGGAAGCATCTCATGGTTCTGCAAAAACAGTGACTGTGGATGAGCCGAACAATTCAACCACACTAAAGGGTCTTAATGAATACACTAACTACAGCATCACAGTATTTGCATCTACCATCAAAGGAGGCGGAATTGTCAGTGAACCAATCTTTGTCATTACGGATGAAGACAGAGGCGGAATTGTCAGTGCACCAATGTTTGTCATTACAGATGAAGACAAGCCAAAAGCTCCCCCTTCTAATGTGAATGGACATAATGCAAGCTCTATTAGTATTTTCGTCAGCTGGGAACAAGTCCCTTTTTCAGATCAAAATGGTGTTATAGTGAGTTATACAGTTACCTACATAGCGTTGCCTGGTGGGTCTTCACAAACAAAGGACGTAACTGCGTCAGCAAATCAAAGCACACTGACCGGTCTCAACGAATACACTAACTACAGCATCACAGTGTTTGCGTCAACGTCAAAGGGAGGAGGAAATCAAAGTACACCTATTGTGGTCATCACAGATGAAGACACAGAGCCAAGTGCTCCTCCTTCTAATGTCAGTGCACATAGTGAGAACTCTACCAGTATTTTCGTCAGCTGGGAACAAGTCCCTTTTCTAGATCAAAATGGTGTTATAGTGAGTTACACAGTTACCTACAGATGGTTTCTTAGTGGCCCTGCACAAACAAAGATTATCAGTGCGCCAGCAAATCAAACCACACTGACCGGTCTAAACAAATACACTTACTACAGCATCACAGTGTTTGCGTCAACATCAAAGGGAGGAGGAAATCAAAGTACACCTATTGTGGTCATCACAGATGAAGACAAGCCAAATGCTCCCCCTTCTAACGTCACTGGACATAATGCAAGCTCTACCAGTATTTTCGTCAGCTGGGGACAAGTCCCTTTTCCAGATCAAAATGGTGTTATAGTAAGTTACACAGTTACCTACTCATGGTTGCCTAGTGGCCCTTTACAAAGAAAGACTGTAAGTGCAGCAGCAAATCAAACCACACTGACCGGTCTCAACGAATACACTAACTACAGCATCACAGTGTTTGCTTCAACATCAAAGGGAGAAGGAAATCAAAGTACACCTATTGTGGTCATCACAGATGAAGACAAGCCAAGTGCTCCTCCTTCTAATGTCAGTACACGTAGTGAGAGCTCTACCAGTATTTTCGTCAGCTGGGAACAAGTCCCTTTTCCAGATCAAAATGGTGTAATAGTGAATTACACAGTCACCTTCATAGCTTTACCTAGTGGCCTTACAAAACCAAAGGTTGTGACTACGTCTGCAAATCAAGCCACACTGGCCGGTCTCAACAAATACACTAACTACAGCATCACAGTGTTTGCGTCAACATCAAAGGGAGGAGGAAATCAAAGTACACCTATTGTGGTCATCACAAATGAAGACAGGCCTGATGGATCACCCGTTATAATTGGTTTAAGAGCTCTTGACAGCACAACCGTCATGGTCAAGTGGAGACCTGTTCCAAAAAACCTTAGAAATGGTATTATTACTCTATACATCATTTCGTACATGGATGAAGAGAAAGAAAAAACAGAATATAAAAGCATTCCAGCACCTGCCTTAGAAGCAATTATCACAAGTCTGAGGCAGAAGGCCAGATATTCATTCAAGATTCGGGCTGCTACTTCGAAAGGTGAAGGACCTTTGAGTGGTGCTAAGGTGACTGAAACTGAAGGTAAAGGTGGTTGTGTCTGCTGTGATCTCCAAGTGAAATTAACTTGGCATTTCAAAACCTCAATTTCTTTAGATTTCGTGTCACAATGTTAA

Transcript

amic_s0010.g6.t2

TAACGCATTAAATCGCCAACAACTGTGTCGTTTAGAATCTTAATATGATTTTAGACTTTTTGACAATGGCACTAAACGCTTCTCCCTCTAATGTAACCGGACATACTCTAAGCTCTACCAGTATTTTGGTCAGCTGGGGACAAGTCCCTTTTCCAGATCAAAATGGTGTTATCTTGAGTTATACAGTTACCTACAGAGCGTTATTACCTAGTGGGTCTTCACAAACAAAGAATGTCACTGCGCCAGCAAATCATACCACACTGACCGCTCTCAACGAATACACTAACTACAGCATCACAGTGTTTGCGTCAACGTCAAAGGGAGGAGGAAATCAAAGTACACCTATTGTGGTCATCACAGATGAAGACAAGCCGAATGCTCCCCCATCTAATGTGATTGGACATAATGCAAGCTCTACCAGTATTTTCGTCAGCTGGGGAGACGTCCCTTTTTCAGATCAAAATGGTGTTATCTTGAGTTATACAGTTACCTACAGAGCGTTACCTAGTGGCTCTTCACAAACAAAGAATGTGACTGCGCCAGCAAATCAAACCACACTGACCGGTCTCAACGAATACACTAACTATAGCATCACATTGTTTGCGTCAACATCAAAGGGACGAGGAAATCAAAGTACACCTATTGTGGTCATTACAGATGAAGACAGGCCTAATGCTGCCCCTGCTAATGTCAGTGGACGTGCTATAAACTCTACAAGTATTTTAGTCAGCTGGGGAGAAGTCCCTTTTCCAGATCAAAATGGTGTCATACTGAGTTACACAGTTACCTACAGATGGCAACCTAGTGGCCCTGCACAAACACATAATGTGACTGCACCAGCAAGTCAAATCACACTGACCGGTCTAAACGAATACACTAACTACAGAATCACAGTGTTTGCTTCGACATCAAAGGGAGAAGGAAATAAAAGTACACCTTTTGTGGTCATCACAGATGAAGACGCGCCAAGTGCAGCACCTGCGTCTCTCCAGGGACACAACAAAAGCTCTACCAGTATTTTCGTTACCTGGGGACAAGTCCCTCCCTCAGAGCAAAATGGTGTCATATTAAATTACACGGTTCGCTACAAGGAAGCATCTCATGGTTCTGCAAAAACAGTGACTGTGGATGAGCCGAACAATTCAACCACACTAAAGGGTCTTAATGAATACACTAACTACAGCATCACAGTATTTGCATCTACCATCAAAGGAGGCGGAATTGTCAGTGAACCAATCTTTGTCATTACGGATGAAGACAGAGGCGGAATTGTCAGTGCACCAATGTTTGTCATTACAGATGAAGACAAGCCAAAAGCTCCCCCTTCTAATGTGAATGGACATAATGCAAGCTCTATTAGTATTTTCGTCAGCTGGGAACAAGTCCCTTTTTCAGATCAAAATGGTGTTATAGTGAGTTATACAGTTACCTACATAGCGTTGCCTGGTGGGTCTTCACAAACAAAGGACGTAACTGCGTCAGCAAATCAAAGCACACTGACCGGTCTCAACGAATACACTAACTACAGCATCACAGTGTTTGCGTCAACGTCAAAGGGAGGAGGAAATCAAAGTACACCTATTGTGGTCATCACAGATGAAGACACAGAGCCAAGTGCTCCTCCTTCTAATGTCAGTGCACATAGTGAGAACTCTACCAGTATTTTCGTCAGCTGGGAACAAGTCCCTTTTCTAGATCAAAATGGTGTTATAGTGAGTTACACAGTTACCTACAGATGGTTTCTTAGTGGCCCTGCACAAACAAAGATTATCAGTGCGCCAGCAAATCAAACCACACTGACCGGTCTAAACAAATACACTTACTACAGCATCACAGTGTTTGCGTCAACATCAAAGGGAGGAGGAAATCAAAGTACACCTATTGTGGTCATCACAGATGAAGACAAGCCAAATGCTCCCCCTTCTAACGTCACTGGACATAATGCAAGCTCTACCAGTATTTTCGTCAGCTGGGGACAAGTCCCTTTTCCAGATCAAAATGGTGTTATAGTAAGTTACACAGTTACCTACTCATGGTTGCCTAGTGGCCCTTTACAAAGAAAGACTGTAAGTGCAGCAGCAAATCAAACCACACTGACCGGTCTCAACGAATACACTAACTACAGCATCACAGTGTTTGCTTCAACATCAAAGGGAGAAGGAAATCAAAGTACACCTATTGTGGTCATCACAGATGAAGACAAGCCAAGTGCTCCTCCTTCTAATGTCAGTACACGTAGTGAGAGCTCTACCAGTATTTTCGTCAGCTGGGAACAAGTCCCTTTTCCAGATCAAAATGGTGTAATAGTGAATTACACAGTCACCTTCATAGCTTTACCTAGTGGCCTTACAAAACCAAAGGTTGTGACTACGTCTGCAAATCAAGCCACACTGGCCGGTCTCAACAAATACACTAACTACAGCATCACAGTGTTTGCGTCAACATCAAAGGGAGGAGGAAATCAAAGTACACCTATTGTGGTCATCACAAATGAAGACAGGCCTGATGGATCACCCGTTATAATTGGTTTAAGAGCTCTTGACAGCACAACCGTCATGGTCAAGTGGAGACCTGTTCCAAAAAACCTTAGAAATGGTATTATTACTCTATACATCATTTCGTACATGGATGAAGAGAAAGAAAAAACAGAATATAAAAGCATTCCAGCACCTGCCTTAGAAGCAATTATCACAAGTCTGAGGCAGAAGGCCAGATATTCATTCAAGATTCGGGCTGCTACTTCGAAAGGTGAAGGACCTTTGAGTGGTGCTAAGGTGACTGAAACTGAAGGTAAAGGTGGTTGTGTCTGCTGTGATCTCCAAGTGAAATTAACTTGGCATTTCAAAACCTCAATTTCTTTAGATTTCGTGTCACAATGTTAATGATATTTTGTGAACAAAGTATACTTCATGTGATCAGCCGATATAACCGAGAGTACCAGAACAGAGGCAGGGTTTAAACAAACGTGGGAATTTGCATGTTCCTTTCAGAGAGATGCAACGATCAGGAACATAGAAATTTTTTATGTTCCTTTGAGTGGTACAACGGTAAGGAGCATAGAAATTTCCATATTGGTTTGAGTAGTACAACGATAAGGAGCATTGACAATTCCATGATCCTTTGAAGGGTAAAACAGTAAGGAGCATAGAAAACTCTATGTTCCTTTGAAGGGTAAAAGAGTAAGGAGCATAGAAAATTCCATGTTCCTTTGAAGGGTAAAAGAATAAGGAGCATAGAAAATTCTATTCTATTCTTTGAGAGGTACAACGAAAAGGAACAAAAATTTCCTTGTTCTTTAGAGGGGTACAACGACATTAGTAATAAATTATTAAGGATTCCTGTTACTAAGATTTTCATATTTACTTATGAGCATTATTGTTTGGTGCTGGCATTTTTCAACTTGAATTAGATCACTATTACTTACTCTAAAGTGGTAGTAACATTGTCCAAAGAGGCGGAGAGAGGAAAGGTATGGACAAACAGCCTTTACCGTTTTGTTTTGCTGATGTTCttctttgttggtgtttgtttgtttgtttgctttttttcttGATCAAGCCTAATAGGCATGTTATCGTCCCATAATCCTCGTAGAATGATCTCCATGGTATTTTATTTTACCTTTTTCCTTACGTCTTACGCTCCATTTAAGATGGTATTCAAACGTTATAGCTAGTCTTCTTTTGATCGAAGCTCAGCGTGGAAGTATTAACTAAAAAACTTGTGCGACTCCTCCACTGTTGCATGTACACTGACATCATTTGCGGTTTTGTTCTTCAGGATATAACCTTCAAAACCTCAACAGTTTTTCCTTTCCTCCTTTTATTTTGAAATTTGTTCATGTTGTTATCGTTTTTAAAGTGTTTGTCATTCAGAATTACCTGTATCGATGTTATTCAAAGTCGCCCGGCTTTCCTCAAATATGACTTGATACGACATTCGTCGAGCAGGTTTCTGTTATCTCTGTGTTGTTTCTGTTCTGTGTTTGAGGACTACACCACGAGGAAGATAAAAGCAGGggcgtagccaggatttttcaaaggggggtcacactgtgtccaagttagggcctcaccagattgtcactatggccaatgtatcgtcatggcatttttgccacctgttgaaggttgtttggttaaaaacgctagcagaaggggggtcacgggcaccccagaatccccttggctacgcccttgGATAAGAGTCACTGATATTCAGGTACGACGGCTTTAATGCCACCTTTGCGAGTGAGGCATGTTCTCCCTTTATATAAAGTGATTTGACCATGGACTAACCATTGGTTAATTAATTTATCTGAATTTGTCTCACCAGTTGTAGCCGGACGACTCTTAGTTCACTATTCTGCAAATATTGCGTAAGAATGAATAGTGTATAGATTTTGATTTCTGTGGAATATGTTTTAGGAAAACGTCGTTATAAAAAGAGGGATGCTTGCTGCTCAAAGGAAGAATACTCAAGACTCAGGAGCGCTTCAAATTGGAATTATTACTTAGCACGCTAAATTAATGCCTTTTTCCGTTGCTCTTTTTCACAACGAACAGAAAGCTTGATCAACGTACTTAACCTTAACTTAGATATCCTTTCTTTTAGCGTTAATGAGGTGTTTCTCGAGTTGTTCGTCAGTACCATTACACTGGTTGACCTGACGTTGGTTCCCTTGATAGTGGCACTGGACCGAGCGATCTCATTGGTCAGGTTCAAGGGTGGCAACAGCCATCCGGGAACAGTACAATCGTTGTTCGTTGCTTGTTCCTCCTTACCCACCCTACTGATGACTCCACGGAACATGTAAATGCGAAAATgcaaacaaacttactgtaaatat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0C5E4	Phosphatidylinositol phosphatase PTPRQ OS=Mus musculus OX=10090 GN=Ptprq PE=1 SV=1
O88488	Phosphatidylinositol phosphatase PTPRQ OS=Rattus norvegicus OX=10116 GN=Ptprq PE=1 SV=1
Q9UMZ3	Phosphatidylinositol phosphatase PTPRQ OS=Homo sapiens OX=9606 GN=PTPRQ PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000019 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050379 all species →	Family	Type I Cytokine Receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23036 all species →	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004896 all species →	Molecular Function	cytokine receptor activity	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0019221 all species →	Biological Process	cytokine-mediated signaling pathway	Interproscan
GO:0019955 all species →	Molecular Function	cytokine binding	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0010.g6.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.