Gene detail

Detailed information of amic_s0010.g7.t2 in Acropora microphthalma

Genomic Location: sc0000010_pilon:167939...184385
NR annotation: XP_044163941.1, receptor-type tyrosine-protein phosphatase delta-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0010.g7.t2

ATGATAGTAAAACGTATTCTTTCTTGTTGTTTCTTAACAGAGCCAAGTGCTCCCCCAGCGAATGTCACCGCAAATGCTGTAAACTCTACCAGTATTTTGGTCAGATGGGGACAAGTCCCTGTTTTAGACCAAAATGGTGTTATAGTGAGTTACACAGTTACTTACAGATCGTTGCGTGGTGGCTCTGAACAAACAAAGAATGTCAATTCGTCAGCAAATCAAGCCACACTGACCGGTCTAAATGAACACACTCGGTACAACATCACAGTTCTTGCTTCAACGGCAAAGGGAGGAGGAATTAAAAGTATACCTATTGATGTCATCACAGAGGAAGACAAACCAAATGCTCCCCCTTCGAATGTAACTGGAAATTTTGCAAGCTCTACCAGTATTTTTGTCAGCTGGGGGCAAGTCCCTCTTTTAGATCAAAATGGTGTTATATTGAGTCACACAATTACCTACGCAGCGTTGCCCAGTGGCTCTACCCTGACAAAGGTTGTGACTGCGCCAGCGAGTCAAACCACACTGACTGGTCTAAATGAGTACACTTACTACAACATTACAGTGTTTGCTTCGACGTTAAAGGGAAGAGGAAGGGAAAGTACACCTATCGTGGTCATCACAGATGAAGACAAACCTTCCGAACCTCCAACATTTTTGGAAGTAAAAGCACTCAGCAGCACTAGCATCTTCGTCAATTGGTCACGTGTCGATGAGGATTCTCGAAATGGTATTATTACGCGATACACCATTTACTATGAGGACGTGGCAAAGGAAAACAACAGAACTGTGGATATTCCAGCACCTGCAACAGAAAAAATCATAACTGGTCTTAGGCAGAAGGCTAATTATTCATTTAAGATTCTGGCAGCGACGTCAAAGGGTGATGGACCTTACAGTAATACCACGGAGGAAGAAACCGAAGCTCCTCCTCCTGCGGACGTTATAGGAACAACGGAGGTGATCATACCGTTTAGGAACAAACAAAAATTGAGCACTGGTGAACCGGTCAGCTACTTTCAAGTAATCGTGATGCCATTGAAAAAAGGACAGGAACCAGGAAATTCTGCTGATAGTAAATACGAAAATGTCACGCGAAAATATCAAGACAGAGTAGAAGGAGAGCCTTACATAACGGCCGAGTTTTCAAAAAAGGACGCAAAAGCAACATTTCCTGTTGGGGATGGAAAAGTTTACTCCCGTTTTGGTGTGAAGGTCTCCAAAAGAAAGCGTAGAAACGTAAATAAACCTGTTATCGAATATCTAAATGGAAAGCTCAGTGATAACACTCAGTACGCAGTCTTTCAGCGTTCTTTTGCTGAAAACGGAACCTATGATAATGAAGGATTTATCACATTTATAACGGAGAAAGACTACATACTCGAGATCGTGGTTGGTATCCTTGTGTCACTATTTGTTGTAGTGGTCATTGCGCTCCCTATTTTTATCTATCGTCGTCGAAGAACACAAAATGAAAATTTAGATGGAGGGATGCCCATGCAAAAGAAGCCGCGCAGACCGACAGCATCCAGGATTTTGGAAAGAGGAATCGACAACCCCAACTTTATCCCAGGTGGGATAATCCCTGTGGAAGAGTTTGAAGGTCACGTGCGTCGCCTTCACGCCAATGATGATCTTTTGTTTTCACAAGAATACGCTGCTCTCCGTCCGGCGTCCGACACCGCTTCCGACGCGACTTTGGCGCAGGAAAATAGATATAAGAATCGTTATAATAATATAGTTGCGTATGATCACAGCCGAGTGAAACTTATTCCAACTAGTAATGTTCCTGGCTCAGATTACATCAACGCAAACTACCTCGATGGTTATAACAAAGAAAAAGCCTACATTGCTACTCAAGGACCTCTCCCAGATACTACAGAAGACTTTTGGAGGATGGTTTGGGAGCAAAACTCGAAAATCATTGTGATGGTGACTAACCTCGAGGAGCGAGGCCGTGTCAAATGCTTTCAATATTGGCCGTCAAAAGGTCGTGAAACTCATGGTGATATACAAGTACAACTCACAGAAACAGTAGAGCTGAGTGATTTCACCATCCGCAAGTTTTGCCTGAAGAAATCCAGTAGCAAGGACGAACGAATGGTCAGTCAGTACCATTATACAATATGGCCAGATCATGGAGTACCTTCGTGTCCTACATCTCTCCTTGCATTTGTCAAAAAGGCATCCGCTGCAAATCCTACTGACGCTGGTCCTATGGTCGTTCATTGCAGCGCTGGTGTTGGAAGAACTGGTACTTTTGTTGTTGTGGACGCCATGTTACAGAGAATCGCAGCAGAGAAAACTGTCGATGTGTTTGGCTATGTGTCGTCCTTGCGGCGTAATAGGAACCTCATGGTTCAAGTCGAGGCGCAATATGTTTTCATACATGAAGCGCTATTGGAGGCTATCCACTCTGGATATACTGAAGTGCAGGCAGTAGAGCTCCGAGCTCACATTAAGAACCTTATGGAAGTCAATCTAAACACTGGTCAAACAGGGATGGACGAAGAGTTTAACCATTTAGGACGTGGAGGCACGGCGCAACCATCCAAATTCCAAGCTGCCAACTTGCATTATAACAAGACCAAGAATCGGTACGCTAACGTTTTGGCATTTGATGACTCACGTGTCAAGCTAAGCGTTTTGAATGGAATAGAAGGGTCTGATTACATTAACGCGAGCTTTATAGATGGTTACATAACGAGACGTGCGTTTATAGCCACTCAGGCTCCAATACCAGATACCATTCCAGACTTTTGGCGCATGATATGGGAGCAAGAGTCATCCACAGTGGTGATGTTGTCTAGAGAGAACGAGAAAGGAAAGACCAAAGTACATCGTTACTGGCCAGGAAAACACCCCGCTACTATTGGCACTTTGGTGGTGGAGATGACAAATGAAATGTCATTTGAAGACTACATCATGAGGGAGATAAAAATCACTAATACTCGGGAGAGTGCTTCTCGAGTTGTTCGGCAGTATCATTACACTGGTTGGCCTGATGATGGTTCCCCGGCTACTGGCACTGGATTGATCGATCTCATTGGTCAGGTTCAAGGGTGGCAACGGCGATCTGGAAACAGTACAATCGTTGTTCATTGCAGTGCTGGTGTGGGTCGAACAGGAGTGTTTTGTGCTTTGAGTATCCTTATTGAGCGCTTGAAGAGTGAAGGTGTTGTGGATGTGTTCCAAACTATCAAAGTGTTGAGAACACAGAGGCCTGCTATGGTTCAGACCCAGGATCAATACGAATTTATTTACCGCGCGCTGAGAGAATACCTGGACTCTTTTGATGCCTACAGCAATTTTGAGGCAGATCAGTATTGA

Transcript

amic_s0010.g7.t2

TAATCTCTCCACATACAATGATAGTAAAACGTATTCTTTCTTGTTGTTTCTTAACAGAGCCAAGTGCTCCCCCAGCGAATGTCACCGCAAATGCTGTAAACTCTACCAGTATTTTGGTCAGATGGGGACAAGTCCCTGTTTTAGACCAAAATGGTGTTATAGTGAGTTACACAGTTACTTACAGATCGTTGCGTGGTGGCTCTGAACAAACAAAGAATGTCAATTCGTCAGCAAATCAAGCCACACTGACCGGTCTAAATGAACACACTCGGTACAACATCACAGTTCTTGCTTCAACGGCAAAGGGAGGAGGAATTAAAAGTATACCTATTGATGTCATCACAGAGGAAGACAAACCAAATGCTCCCCCTTCGAATGTAACTGGAAATTTTGCAAGCTCTACCAGTATTTTTGTCAGCTGGGGGCAAGTCCCTCTTTTAGATCAAAATGGTGTTATATTGAGTCACACAATTACCTACGCAGCGTTGCCCAGTGGCTCTACCCTGACAAAGGTTGTGACTGCGCCAGCGAGTCAAACCACACTGACTGGTCTAAATGAGTACACTTACTACAACATTACAGTGTTTGCTTCGACGTTAAAGGGAAGAGGAAGGGAAAGTACACCTATCGTGGTCATCACAGATGAAGACAAACCTTCCGAACCTCCAACATTTTTGGAAGTAAAAGCACTCAGCAGCACTAGCATCTTCGTCAATTGGTCACGTGTCGATGAGGATTCTCGAAATGGTATTATTACGCGATACACCATTTACTATGAGGACGTGGCAAAGGAAAACAACAGAACTGTGGATATTCCAGCACCTGCAACAGAAAAAATCATAACTGGTCTTAGGCAGAAGGCTAATTATTCATTTAAGATTCTGGCAGCGACGTCAAAGGGTGATGGACCTTACAGTAATACCACGGAGGAAGAAACCGAAGCTCCTCCTCCTGCGGACGTTATAGGAACAACGGAGGTGATCATACCGTTTAGGAACAAACAAAAATTGAGCACTGGTGAACCGGTCAGCTACTTTCAAGTAATCGTGATGCCATTGAAAAAAGGACAGGAACCAGGAAATTCTGCTGATAGTAAATACGAAAATGTCACGCGAAAATATCAAGACAGAGTAGAAGGAGAGCCTTACATAACGGCCGAGTTTTCAAAAAAGGACGCAAAAGCAACATTTCCTGTTGGGGATGGAAAAGTTTACTCCCGTTTTGGTGTGAAGGTCTCCAAAAGAAAGCGTAGAAACGTAAATAAACCTGTTATCGAATATCTAAATGGAAAGCTCAGTGATAACACTCAGTACGCAGTCTTTCAGCGTTCTTTTGCTGAAAACGGAACCTATGATAATGAAGGATTTATCACATTTATAACGGAGAAAGACTACATACTCGAGATCGTGGTTGGTATCCTTGTGTCACTATTTGTTGTAGTGGTCATTGCGCTCCCTATTTTTATCTATCGTCGTCGAAGAACACAAAATGAAAATTTAGATGGAGGGATGCCCATGCAAAAGAAGCCGCGCAGACCGACAGCATCCAGGATTTTGGAAAGAGGAATCGACAACCCCAACTTTATCCCAGGTGGGATAATCCCTGTGGAAGAGTTTGAAGGTCACGTGCGTCGCCTTCACGCCAATGATGATCTTTTGTTTTCACAAGAATACGCTGCTCTCCGTCCGGCGTCCGACACCGCTTCCGACGCGACTTTGGCGCAGGAAAATAGATATAAGAATCGTTATAATAATATAGTTGCGTATGATCACAGCCGAGTGAAACTTATTCCAACTAGTAATGTTCCTGGCTCAGATTACATCAACGCAAACTACCTCGATGGTTATAACAAAGAAAAAGCCTACATTGCTACTCAAGGACCTCTCCCAGATACTACAGAAGACTTTTGGAGGATGGTTTGGGAGCAAAACTCGAAAATCATTGTGATGGTGACTAACCTCGAGGAGCGAGGCCGTGTCAAATGCTTTCAATATTGGCCGTCAAAAGGTCGTGAAACTCATGGTGATATACAAGTACAACTCACAGAAACAGTAGAGCTGAGTGATTTCACCATCCGCAAGTTTTGCCTGAAGAAATCCAGTAGCAAGGACGAACGAATGGTCAGTCAGTACCATTATACAATATGGCCAGATCATGGAGTACCTTCGTGTCCTACATCTCTCCTTGCATTTGTCAAAAAGGCATCCGCTGCAAATCCTACTGACGCTGGTCCTATGGTCGTTCATTGCAGCGCTGGTGTTGGAAGAACTGGTACTTTTGTTGTTGTGGACGCCATGTTACAGAGAATCGCAGCAGAGAAAACTGTCGATGTGTTTGGCTATGTGTCGTCCTTGCGGCGTAATAGGAACCTCATGGTTCAAGTCGAGGCGCAATATGTTTTCATACATGAAGCGCTATTGGAGGCTATCCACTCTGGATATACTGAAGTGCAGGCAGTAGAGCTCCGAGCTCACATTAAGAACCTTATGGAAGTCAATCTAAACACTGGTCAAACAGGGATGGACGAAGAGTTTAACCATTTAGGACGTGGAGGCACGGCGCAACCATCCAAATTCCAAGCTGCCAACTTGCATTATAACAAGACCAAGAATCGGTACGCTAACGTTTTGGCATTTGATGACTCACGTGTCAAGCTAAGCGTTTTGAATGGAATAGAAGGGTCTGATTACATTAACGCGAGCTTTATAGATGGTTACATAACGAGACGTGCGTTTATAGCCACTCAGGCTCCAATACCAGATACCATTCCAGACTTTTGGCGCATGATATGGGAGCAAGAGTCATCCACAGTGGTGATGTTGTCTAGAGAGAACGAGAAAGGAAAGACCAAAGTACATCGTTACTGGCCAGGAAAACACCCCGCTACTATTGGCACTTTGGTGGTGGAGATGACAAATGAAATGTCATTTGAAGACTACATCATGAGGGAGATAAAAATCACTAATACTCGGGAGAGTGCTTCTCGAGTTGTTCGGCAGTATCATTACACTGGTTGGCCTGATGATGGTTCCCCGGCTACTGGCACTGGATTGATCGATCTCATTGGTCAGGTTCAAGGGTGGCAACGGCGATCTGGAAACAGTACAATCGTTGTTCATTGCAGTGCTGGTGTGGGTCGAACAGGAGTGTTTTGTGCTTTGAGTATCCTTATTGAGCGCTTGAAGAGTGAAGGTGTTGTGGATGTGTTCCAAACTATCAAAGTGTTGAGAACACAGAGGCCTGCTATGGTTCAGACCCAGGATCAATACGAATTTATTTACCGCGCGCTGAGAGAATACCTGGACTCTTTTGATGCCTACAGCAATTTTGAGGCAGATCAGTATTGAGATTAGAAGAATAGAAGGTAGATAATTGAACATAGATAGACAATACGAGGATACCCGAGAGAAAAGCTCTCTCTCCTTACTCCATTAACCCAACGGAACATTTTTGTCTACCACAGCGAGACCCTGCTTATTTTTTCCTCATATTGCAAAGCATTTGACTTCCCTTTGCGATGATCCAATAATGAGAGTATTGTAATTCTGAATACTGAAAAGTGTGGAGTCTATGTGTATTATCAACACATGAAAATGTGGGTGCGATATATCAAGTGTGAAAGATAAAATTCTGAAGAATAAGCTCATTAGCGCTTTTGATTTTAACAATCCATCACTTTATCGCTGATTTTTAGTTGCACTGGAAACGCTGAAATTAAGAGAGATGACTATAAGTTCCTTAAGCTTGCTAAGAATATTTGTTGTAACATGATGCAGTCTACTTTATGAGAAAAAGTACGGGAAACATCCCCAACAAAGATTGCCTTGGTTTTTCAGTCCCAAACAAAGAATACTCGCTGTAAAAGTTACAGAGACCTCCACACTAAAAGCATCATAAATAGGGATAGAATAACCTCTTGTTTATTATACTCTTACATATGTTTTACAGCATGATTTATTTTGCAGTTAATTAGATGATATTATGTTCAGAATTTAGAACGTTCGAATATAGTTATTGACTGGTTACGCAAATGTGATAATAGGAATTTTATTACTTTAAACGAATTCAGTAATTTTTAGTCGTTTTACACTTGAATTTTTTGGTGTGGAACATAATTCACTCAATGAATGTTCTAATTTCGGTATTTTAATGAACTTTTTGATAAAATTCGATTCGTCATCTACCATTACGTTAAAATATGCATCTTATCGGCTTTTGACAAACTACCATATTTCTTAACAAATAGCCAGCTTTATTTTTAATTTGTTTTGGTTTGTTTTTTCATCATATTAGTTAATATTCTTCTATAAATTCTTAATTGAAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23468	Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens OX=9606 GN=PTPRD PE=1 SV=2
Q64487	Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus OX=10090 GN=Ptprd PE=1 SV=3
F1NWE3	Receptor-type tyrosine-protein phosphatase S OS=Gallus gallus OX=9031 GN=PTPRS PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000057 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050713 all species →	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46957 all species →	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan
GO:1990264 all species →	Biological Process	peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0010.g7.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.