Gene detail

Detailed information of amic_s0011.g131.t1 in Acropora microphthalma

Genomic Location: sc0000011_pilon:1629334...1638626
NR annotation: XP_015757937.1, PREDICTED: cyclin-dependent kinase-like 4 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0011.g131.t1

TATTGTTTTGCCGAAGGCATGATCGTGTAAGGAGTTGTGACTCTGTTTTACTCTGTACTACCAATTCCGCTATCTTCGCCCTCGGATCATGAAAACTGTACTTTGATAGGGAGCGGTATTCTCGACGGCTTGGCGAATAAATTCTGAAGAAAATGGTAAGAATCCTTTTGCCACTTCCAGAAGCTATTATCTTCGGGACTTTCGCGTATTTGATCTAGCTACTGTAGCTTTCAAGTCTATCAAGAATACGGACGACTATTTGCAAATGGATAAGTTCGAAAAGCTTGGGAAAATCGGCGAAGGATCTTATGGGGTGGTATTTAAATGTAGGAACAAAGAGACAGGGCAGATAGTGGCGATCAAGAAATTTGTGGAATCAGAAGATGACCCGTTAATAAAGAAGATAGCGATGCGAGAAATTCGCATGCTCAAGAGTTTACGACACCATAACCTTGTTAACCTCCTGGAGGTGTTTAGAAGAAAGCACAAGATACATATGGTGTTCGAGTATTGCGACCACACAGTCCTTAATGAATTGGAAGCACATCCCAGAGGCGTTGAAGAAAAAATGGTGAAAAGCATAATTCACCAAACACTTCAAGCTGTCAATTTCTGTCATCAACATAAGTGTGTTCACAGAGATGTCAAACCTGAGAATATTCTCATAACTAAAGATGGAGTCATTAAACTGTGTGACTTTGGATTTGCCAGGATATTAAATAATGACGAGTATACAGATTATGTTGCAACAAGATGGTACAGAGCACCAGAGCTGCTTGTTGGTGACACGACTTATGGCTTCCCTGTAGATGTCTGGGCTATCGGCTGTGTATTTGCCGAGCTTATCACTGGACAGCCACTATGGCCAGGAAAATCTGATCTTGACCAGTTATACTTGATCAGAAAAACATTAGGTGATCTTACCGATAAACAAAGGAAGATTTTTATGGAAAATCAGTTTTATCGTGGATTAAGTATTCCAGAACCTAGAGAAATGGATCCTCTAGAATCAAAATTCAAAATTCCAGGGCAAGCAATGAGTTTCATGAAGGGTTGTTTTGAAATGGAGCCAAACCAGCGACTAACCTGTGCAGAACTCTTGGCACATGCTTTTTTTGACGATTACGAACCAATGAAACCTCCCGCTGTCAAAACACGGAAAACAAGGCTCCGGGTCAAACCACAAATTGATAACGAGCCAGCGTCACATCACCTGCCTCAACTTGCTATCGATTCTCCAGCACCCGACAGAACAGATAAAAACAAAGACAAAACGAAACTTAGTAAGCTCGACCATCTACCATCAATTTAATTACGATGGGTTTTAAAAGAGGTCGACTTTCTCCATGAGCAGTTCCACAAGAAACTACTTCCCAGTAGTCTCCATTTGAGTGTTCACACTAGAGGATTTCACGCTCGAACACCAAAGTTAGAACCAACTTGTCCAGGGAATGAAAGAACTGCCCAGTAGCTTTCATTTAAATGGTCACACCTTAGGATTTCACCCTCAGACTCAAAGTTAGAACCACCATGCATGTGTAGTATAATGAACATGACCACAGGAAAGCGTATAACTCATTAGCTTTCCCTTGTAGCCACTGTACAAATGTTTCCTATCACTTCAGAGAAGTGTGTTCATACTAGTTACAGAAGTTCGTATCCCTTCTCTTCTTTTCATACGTTTGAAAAAAAAAACCATTAGTGTTTGTTGTTTGAAGCGACTATTGGTGTGTAAATGTAGTATTTAAATTATAATTAGTTCTTTTGTATGAAAAGTCCCTTATACATTTTAAAGAGAAGCATTTTACTCGCTGTGTGCGGTAACTTAAATATTCAAGAAAAAAACAACGAAGGCTATTTTCCAATAGGGTTTTTTGTCGAAGTCAAGTTAAGCGTGAAGTAATTCAATTgagtgattttcaattgaccgtctaaaaaccaatatcaaagttattactccgaccatgatcaaagcgcggcaaaaatcgcgcgtataaggtgcgattggttttacttgccattggttaaaaattggcgcgatactttttagccaatcactaagcgtgtatggcaatcgcgtaattagttGATATGACAACGGTAACGTCAGCCAAAAAAGCCAAGAAAAGCATGCTTTCGTGCAACTCGTACAGCATGCTTTCAGCACTTTTTTTATATTTTACAAAACTACAAAGAACAATTAAATTTAACGGGTTGGACTTCACCGCGAGCAAACAATAGTAAATATTACTCTTCAAACTTCCTACCATTGGTTTGTTATGGCGTATTTCGATGACACCGAGAAATAAAGGCGAACACAACTGGAACCATCATGTCAAAGTCAAATCCAATAAATTTTGTTGTGGATATATACGGCAAAGAAATTTGAGCTTAACATTTACCGTTTACCGAGAATACGAAAACATTACCAGAAACAAGTTTGCGCTATCACAAGTATTTTTCTATAACTGGATTAGTCTAAGGGAATTTTAAGTAAAGAATAAACGCTTGAACTGTAGTAGGCTCACGTTGAGTTCGGCAACTTCTGGAAATGCTCAAATATACGGCGAAGATACGCGCCACACTTGCAACATGATTAGTTTTCCTTTTCAAACTAACGACTATTTTATTGCGTTACCGTGTCCGCTTTCGCCGTCTCAGCATAACTCCCTTGAGGCTTCGCTAGCTGGCCAAATTTAATCATTAAAGTCTGTGTAAAAGTTCGGGTTCTTAGGTTGTTGACGAACGATGTATTATTAATGTGTATAAGGAGAAATGCAAAAATATACAAATATTTTGAGACTTTGAGTCGTTTGCCAATATTGAATACGCTGAGGAACTTAAAGGCATTTTAAAATGACGAATGGGCTCTGACTTAATGTTTGTTTCTCTGGCGAATGAGTTCGTTAAGGTTTCCGTTAGAAATGTTAAATTCAACACAGGACACGTGGTCGCGTAAACATAGATGAAAATGGAAAATGCTCCATTTTTGTTGCCGGGAAATGCTTCTGCTAATGATTAAGTTACCTGTCTTCATGTCTCCTTGATAGTAAACTTCAGTGAACTGTTTAAAGTCCCCTATTTCAGATTTTATGCTTTGAGGTGGCATGCCTTCTCAACTTCAGCCATCTTTGTCTGCAATAGTGCGCGCGAACAGACGCCAGTATTGGCGGAGAGGCAATGTAACATGCACTACATATTTTACTGATCGTGAAATCAATAAAAATTGTGGAAAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AXJ9	Cyclin-dependent kinase-like 1 OS=Danio rerio OX=7955 GN=cdkl1 PE=2 SV=1
Q3TZA2	Cyclin-dependent kinase-like 4 OS=Mus musculus OX=10090 GN=Cdkl4 PE=2 SV=1
Q00532	Cyclin-dependent kinase-like 1 OS=Homo sapiens OX=9606 GN=CDKL1 PE=1 SV=8

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001158 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR050108 all species →	Family	Cyclin-dependent kinase	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24056 all species →	CELL DIVISION PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08824	CDKL; cyclin-dependent kinase-like	EC:2.7.11.22	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.