Genomic Location: sc0000011_pilon:2169262...2206382
NR annotation: XP_029205789.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114969617 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families
| CDS |
| amic_s0011.g164.t1 |
| Transcript |
| amic_s0011.g164.t1 |
| Protein |
| amic_s0011.g164.t1 |
| UniProt accession | Description |
|---|---|
| Q55DW4 | ABC transporter G family member 1 OS=Dictyostelium discoideum OX=44689 GN=abcG1 PE=3 SV=1 |
| Q54T02 | ABC transporter G family member 24 OS=Dictyostelium discoideum OX=44689 GN=abcG24 PE=3 SV=1 |
| Q7XA72 | ABC transporter G family member 21 OS=Arabidopsis thaliana OX=3702 GN=ABCG21 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001528 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01061 all species → | ABC2_membrane | ABC-2 type transporter | Family | Interproscan |
| PF03283 all species → | PAE | Pectinacetylesterase | Family | Interproscan |
| PF00005 all species → | ABC_tran | ABC transporter | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013525 all species → | Domain | ABC-2 type transporter, transmembrane domain | Interproscan |
| IPR004963 all species → | Family | Pectinacetylesterase/NOTUM | Interproscan |
| IPR017871 all species → | Conserved_site | ABC transporter-like, conserved site | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR003439 all species → | Domain | ABC transporter-like, ATP-binding domain | Interproscan |
| IPR050352 all species → | Family | ATP-binding cassette subfamily G transporters | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48041 all species → | ABC TRANSPORTER G FAMILY MEMBER 28 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0140359 all species → | Molecular Function | ABC-type transporter activity | Interproscan |
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0042626 all species → | Molecular Function | ATPase-coupled transmembrane transporter activity | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05642 | ABCA2; ATP-binding cassette, subfamily A (ABC1), member 2 | - | Transporters | ko02000 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
