Detailed information of amic_s0011.g184.t2 in Acropora microphthalma

Genomic Location: sc0000011_pilon:2601192...2625476
NR annotation: XP_029204350.2, latent-transforming growth factor beta-binding protein 1-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q66PY1Signal peptide, CUB and EGF-like domain-containing protein 3 OS=Mus musculus OX=10090 GN=Scube3 PE=1 SV=1
Q8IX30Signal peptide, CUB and EGF-like domain-containing protein 3 OS=Homo sapiens OX=9606 GN=SCUBE3 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005433 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07645
all species →		EGF_CACalcium-binding EGF domainDomainInterproscan
PF12947
all species →		EGF_3EGF domainDomainInterproscan
PF13855
all species →		LRR_8Leucine rich repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR049883
all species →		DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR024731
all species →		DomainEGF domainInterproscan
IPR000152
all species →		PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR018097
all species →		Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR050328
all species →		FamilyMultifunctional Developmental and Immune ReceptorInterproscan
IPR001611
all species →		RepeatLeucine-rich repeatInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24373
all species →		SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan
GO:0031012
all species →		Cellular Componentextracellular matrixInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0011.g184.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP