Detailed information of amic_s0011.g206.t1 in Acropora microphthalma

Genomic Location: sc0000011_pilon:2934785...2937653
NR annotation: XP_015772144.1, PREDICTED: histone-lysine N-methyltransferase PRDM9-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P0C6Y7Histone-lysine N-methyltransferase PRDM9 OS=Rattus norvegicus OX=10116 GN=Prdm9 PE=3 SV=1
Q96EQ9Histone-lysine N-methyltransferase PRDM9 OS=Mus musculus OX=10090 GN=Prdm9 PE=1 SV=2
Q9NQW5Histone-lysine N-methyltransferase PRDM7 OS=Homo sapiens OX=9606 GN=PRDM7 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000194 (this species only)
Transcription factor familyzf-C2H2 · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21549
all species →		PRDM2_PRPR domain zinc finger protein 2, PR domainDomainInterproscan
PF00096
all species →		zf-C2H2Zinc finger, C2H2 typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR046341
all species →		Homologous_superfamilySET domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24394
all species →		ZINC FINGER PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K20796PRDM7_9; [histone H3]-lysine4 N-trimethyltransferase PRDM7/9EC:2.1.1.354
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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