Gene detail

Detailed information of amic_s0011.g217.t1 in Acropora microphthalma

Genomic Location: sc0000011_pilon:3324548...3340642
NR annotation: XP_044171955.1, malignant fibrous histiocytoma-amplified sequence 1 homolog, partial [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0011.g217.t1

ATGGCCGATGAGTACGGATTTGAAGTGATAAATATGGTTCCAAAGGAAATACCAACAACAGAAGAGAATGGAATCATCACAGTGGATCTTGAAGGGTATGACCCTGTGGCACCAGAAGACCTTTGTAGAATCTGCAATATTCATAGACTAAACCATCTGCGACTGTTTTCAAACTATTTGAAGGAGATTCCCCCCAAATTCTGTCAACTACAACAACTGCGTACACTTGTCATGAGTTGTAGTTCCATAAAACCAGACAATGGCTTGTCAAGATTACCGGAGCAGTTTGGCAGATTTTCACTCCTCGAAGAACTGCATCTGGCTGGGAACCATTTTGAAGCCTTTCCTTTGCCAATATGTCAGCTGTGTGGACTCAAGAAGCTGTACATGAACAATTGTACATTGACAAAAATACCACAACAGTTGAACAATATATCATGTTTGACTGAGGTGGATTTCAGTTATAATAGTCTTGGAAACCCTGATAGCCTACCTGAAGAATTTTTCAATCTTCCAAATCTGAAAGATTTGTACTTAATAGATTGCCAATTGAAAGAGTTACCGCCTGCAATAGGAAACCTGAGGAGCTTAGAAGGGCTTAGAGTTGGAAGGAACAATCTGTCATCGCTTCCGGAAGAGTTATATAACCTGACAAATCTTACAAAACTTGATGCTCGTCGAAACAACATATCAGAGTTGTCCCCAAGAATTGGACAACTTTGCAATTTAGAACTTCTCATAATTATGGAGAATAAACTGACCACTCTGCCTGATGAGATCAAGAACTTACAAAGCTGCAAGCATATCAATCTTTTTGATAATAAGCTGACCTGCCTCCCTCGAGCTATTATTGAAATGCCTGCCCTGGGTTCCTTGATTGTTGATGGAAACAACAATCTACGAAGACCACCCATTGATGCTTGTAGAGGCGGTTTAACTAGCATCAGAGGCTATTTTGAATCATTAGATGCTGTCAATTCTGAGGCTGTTCATTCACAGCGTCTCAAGCTAGTAATATTGGGAGAAGCTGGTGCAGGAAAAACAAGCCTGGCCCATGCTCTTGTGCACGCGACAGCTCTTACTTTTCCAGATGGCCAACCACACAGTACTGTGGGTGTGGATTTTCACATGTGGCGGCCAGATCCAAGTGGTGTTGAGTTCTACATCATTGATTTTGCTGGTCAACGGAAATACCAACTCACTCATCCCTTCTTCCTTTGTCCAGAGGCACTGCATATCCTGGTCGTTGACCTCTTTCACTATGAGCCAACAAAAAGCTGTTTTTGCACGACTATCGGGGATTGGCTTGACTTTATCACTTCTCGCATCTTGAAGCCAAGAATCATGATAGTGCCGACTCATCTAGATGAATTTGACAGCAGCGACACAAGCGAAGTAAAGAATAGGTGTGATGACATACTTGACCGTGTCAGGCAGTACGGTGTCGCACAGATTGCATTGATTGACCGCGAAATCTCAGAAAAGAAGAAAAAGGGTTTAAAAAATCCAGTGCAATGTGGCAGTGATCCAGAATGGAAGAAGAAAAATCCGCCAATCATATCCTCTGTTCTTAACTCTTCACCTTTATCTGAAGATCCAACCTCTCCGACCTTGGATGGTGAGAGTTACATTGCAATGGTCCCAGTGAGTAACATACGGGAACTCGTTGGAATGAATGCACTACACACGGAGATCATCCGGGTGGCCAATGACCACCAACTCTTTCCCTCTGTTGGCAGAGTTTTACCACCAGATTGGATTACCCTTGAAAAGGCGTTGAAGAAGTACAGGGAAGAAGTTCACTGCATGTCTTTCAAGGATTTTGAAGCATTTGCGAAAAAATGCACCAACCTTTCTCCCCAAGGAATCAAAGCTGCCCTCTTGTACTTAGACTCAATTGGACAAGTAAGATACTATGAGGGCACTCCATCTGAATATGATGTCTTCATTGACTTGAAATGGTTAGGAAAATTGGCCAAGTGCCTTTTTCGTCATGATCTGGAACACACATTGAAGTTTGATGAAAGATATGGAAAGTATGTGCTGGAGGGTAATTTTGGAAACCTGAAAAAAAAGCTCCTACAAGAAGCTATTTTGTCGGAGTCTCTGTTGAGGTGTATCTGGGATGAAATGAGCCTTGACGATGACATCTTCCTGCAAATGGTAGCACTTCTGCATCATCTAGGCCTTGCTTGTCCAATGCATTTAGATAGCTCAGATGAAAGTAATCTTTTGGTTCCGTGGTTCCTGAATGACTACCCTGAACCTGCGCAACTAATGTCATCGAGTTTACCCAAAGATCAGGAAGAGATTCATCTGTTGTTTATGATGTCTTATCTGCCTCCTGGTTTGTTCAATCGTCTGCGAGTCCGATGCTGTTCTCCAGGCATCAACTATTTCAACTGGAAAGATCATTTAAGATTGTTGATGGATGATCACTGGGTCGATGTATGGAATGACAAACACCCACCTGGAACGGAGGAAAGCTCACCTTCAATTCACATCAAAGGGAGGGGACCCAAAGGTTTCACAAAACAATTGTGGCAATTTTTGCTACAAGTTGTGCAGGAAGCTGAAGCTCTGTTAACAGAGTGGCAAAGAGTGACGGTGTGCCGTTTTTCTCTGTGCCCACTTTGCAACCAGAAAGGGAAAGCAAGTCCTTGCCTTTTTTCGTGTAGTAATTGGTTGAGCACCAATCCTCAGAACAAGCGTCTTTCTGCACAGACAAAGATTTGTAAAGCGAGTTCCTGGTTGGGTGAGAAGTTCCCCATCAATCTTATCTATCCTCCTCCCGAAGTTGTGAACGAGCTGTTAGAGGTCACAACATTTTGTGAACCAGTTTCGGAAGATGTTCCTGCGGCCCTCATTGCTGATCTCTCTCAGATGATCGCCAAAGAGCACAAGTTGGTTGGAATGTACCTGGGCCTTTCGAAAGATAAGTTGAATGCTTTGGATGCAGAACATTCTCCAGTTGAGGAGAAAATTGTTGCAATGTTAAATGCATGGAAAGATAAAATGACAATTAAAGCAACAAGGAGCAACCTCATAAAAGCATTGGTTAGTGTTAAAAGGAATGATGCTGCAGAAAAAGTCACACGTTTTAAAGaatag

Transcript

amic_s0011.g217.t1

GAAGAGGTCGGGGTTTGCAGTTCCAAGAACTTACAGAAATCGATGAATTTGGACGGGAAATTTCGCTAGGTACAAGGTTCACTATAAAATTCCTTCAAAATCCTTAAAAGGAAATATGTGGAGGTCACTCACGTAAGAAGCTGTGTGATCAAAAAGTTTAAATCAGCTGATGAAAATGTGCTTTTGCAAGTATTTGGATTAATCATTTCCCTGCGCGCTCGAAGGTACGCTTCCCAAAACAGATATGCTTGGATTCCCTGGTTGTCTTGATATGGCTTTGGTATTCAAGAATCCCAAGACCTTGCTTAAAAATTGAGCTGCGTTCTAAGGTTCATCATGCGATATGGCCGATGAGTACGGATTTGAAGTGATAAATATGGTTCCAAAGGAAATACCAACAACAGAAGAGAATGGAATCATCACAGTGGATCTTGAAGGGTATGACCCTGTGGCACCAGAAGACCTTTGTAGAATCTGCAATATTCATAGACTAAACCATCTGCGACTGTTTTCAAACTATTTGAAGGAGATTCCCCCCAAATTCTGTCAACTACAACAACTGCGTACACTTGTCATGAGTTGTAGTTCCATAAAACCAGACAATGGCTTGTCAAGATTACCGGAGCAGTTTGGCAGATTTTCACTCCTCGAAGAACTGCATCTGGCTGGGAACCATTTTGAAGCCTTTCCTTTGCCAATATGTCAGCTGTGTGGACTCAAGAAGCTGTACATGAACAATTGTACATTGACAAAAATACCACAACAGTTGAACAATATATCATGTTTGACTGAGGTGGATTTCAGTTATAATAGTCTTGGAAACCCTGATAGCCTACCTGAAGAATTTTTCAATCTTCCAAATCTGAAAGATTTGTACTTAATAGATTGCCAATTGAAAGAGTTACCGCCTGCAATAGGAAACCTGAGGAGCTTAGAAGGGCTTAGAGTTGGAAGGAACAATCTGTCATCGCTTCCGGAAGAGTTATATAACCTGACAAATCTTACAAAACTTGATGCTCGTCGAAACAACATATCAGAGTTGTCCCCAAGAATTGGACAACTTTGCAATTTAGAACTTCTCATAATTATGGAGAATAAACTGACCACTCTGCCTGATGAGATCAAGAACTTACAAAGCTGCAAGCATATCAATCTTTTTGATAATAAGCTGACCTGCCTCCCTCGAGCTATTATTGAAATGCCTGCCCTGGGTTCCTTGATTGTTGATGGAAACAACAATCTACGAAGACCACCCATTGATGCTTGTAGAGGCGGTTTAACTAGCATCAGAGGCTATTTTGAATCATTAGATGCTGTCAATTCTGAGGCTGTTCATTCACAGCGTCTCAAGCTAGTAATATTGGGAGAAGCTGGTGCAGGAAAAACAAGCCTGGCCCATGCTCTTGTGCACGCGACAGCTCTTACTTTTCCAGATGGCCAACCACACAGTACTGTGGGTGTGGATTTTCACATGTGGCGGCCAGATCCAAGTGGTGTTGAGTTCTACATCATTGATTTTGCTGGTCAACGGAAATACCAACTCACTCATCCCTTCTTCCTTTGTCCAGAGGCACTGCATATCCTGGTCGTTGACCTCTTTCACTATGAGCCAACAAAAAGCTGTTTTTGCACGACTATCGGGGATTGGCTTGACTTTATCACTTCTCGCATCTTGAAGCCAAGAATCATGATAGTGCCGACTCATCTAGATGAATTTGACAGCAGCGACACAAGCGAAGTAAAGAATAGGTGTGATGACATACTTGACCGTGTCAGGCAGTACGGTGTCGCACAGATTGCATTGATTGACCGCGAAATCTCAGAAAAGAAGAAAAAGGGTTTAAAAAATCCAGTGCAATGTGGCAGTGATCCAGAATGGAAGAAGAAAAATCCGCCAATCATATCCTCTGTTCTTAACTCTTCACCTTTATCTGAAGATCCAACCTCTCCGACCTTGGATGGTGAGAGTTACATTGCAATGGTCCCAGTGAGTAACATACGGGAACTCGTTGGAATGAATGCACTACACACGGAGATCATCCGGGTGGCCAATGACCACCAACTCTTTCCCTCTGTTGGCAGAGTTTTACCACCAGATTGGATTACCCTTGAAAAGGCGTTGAAGAAGTACAGGGAAGAAGTTCACTGCATGTCTTTCAAGGATTTTGAAGCATTTGCGAAAAAATGCACCAACCTTTCTCCCCAAGGAATCAAAGCTGCCCTCTTGTACTTAGACTCAATTGGACAAGTAAGATACTATGAGGGCACTCCATCTGAATATGATGTCTTCATTGACTTGAAATGGTTAGGAAAATTGGCCAAGTGCCTTTTTCGTCATGATCTGGAACACACATTGAAGTTTGATGAAAGATATGGAAAGTATGTGCTGGAGGGTAATTTTGGAAACCTGAAAAAAAAGCTCCTACAAGAAGCTATTTTGTCGGAGTCTCTGTTGAGGTGTATCTGGGATGAAATGAGCCTTGACGATGACATCTTCCTGCAAATGGTAGCACTTCTGCATCATCTAGGCCTTGCTTGTCCAATGCATTTAGATAGCTCAGATGAAAGTAATCTTTTGGTTCCGTGGTTCCTGAATGACTACCCTGAACCTGCGCAACTAATGTCATCGAGTTTACCCAAAGATCAGGAAGAGATTCATCTGTTGTTTATGATGTCTTATCTGCCTCCTGGTTTGTTCAATCGTCTGCGAGTCCGATGCTGTTCTCCAGGCATCAACTATTTCAACTGGAAAGATCATTTAAGATTGTTGATGGATGATCACTGGGTCGATGTATGGAATGACAAACACCCACCTGGAACGGAGGAAAGCTCACCTTCAATTCACATCAAAGGGAGGGGACCCAAAGGTTTCACAAAACAATTGTGGCAATTTTTGCTACAAGTTGTGCAGGAAGCTGAAGCTCTGTTAACAGAGTGGCAAAGAGTGACGGTGTGCCGTTTTTCTCTGTGCCCACTTTGCAACCAGAAAGGGAAAGCAAGTCCTTGCCTTTTTTCGTGTAGTAATTGGTTGAGCACCAATCCTCAGAACAAGCGTCTTTCTGCACAGACAAAGATTTGTAAAGCGAGTTCCTGGTTGGGTGAGAAGTTCCCCATCAATCTTATCTATCCTCCTCCCGAAGTTGTGAACGAGCTGTTAGAGGTCACAACATTTTGTGAACCAGTTTCGGAAGATGTTCCTGCGGCCCTCATTGCTGATCTCTCTCAGATGATCGCCAAAGAGCACAAGTTGGTTGGAATGTACCTGGGCCTTTCGAAAGATAAGTTGAATGCTTTGGATGCAGAACATTCTCCAGTTGAGGAGAAAATTGTTGCAATGTTAAATGCATGGAAAGATAAAATGACAATTAAAGCAACAAGGAGCAACCTCATAAAAGCATTGGTTAGTGTTAAAAGGAATGATGCTGCAGAAAAAGTCACACGTTTTAAAGaatagcctgatttagcaagagaatgtgaatgacactcactatggcatgtgcggtacaaataaccaaatgtaatttatggtcaaattagaacagaatctagactttttgtgcaccctcacgttgtcatctgatgttctttccctgttgctaaatcagcc

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001531 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR050715 all species →	Family	Leucine-rich repeat and signaling effector domain-containing protein	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR020859 all species →	Domain	Roc domain	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45752 all species →	LEUCINE-RICH REPEAT-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0011.g217.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.