Gene detail

Detailed information of amic_s0011.g220.t2 in Acropora microphthalma

Genomic Location: sc0000011_pilon:3355063...3359717
NR annotation: XP_029187847.2, tubulin delta chain-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0011.g220.t2

ATTCTTTGACTTCAAGACTTCGTGGCTTGTTCTTTTTTCAGGCGTCACAAGAAATGTGATCACAAGTTGACTTATTTTTGCACGATTTCTTAGTCGACATGAACTGCCTTTTATTGAACGCTAGCTTTTTTGAACTACAGTATTTTATCGAGAAAACTCAGTTGGCGTGTTAATTTGTTTATTTGATGAAGAAAGTGTCAGCTAACTTTCTCTGTGTATATTCAGTCTGATTGGACCACCGTGCACCATGTCATCTATTGTACTATTGGTTGGACAATGTGGAAATCAAGTTGGACATGATCTTATGTCGTTGATTGACACAAGTGACGTCCATCCACTGTGTCACAGAGATGGAAAACTCCGTTGTGTATGTGTGGACAGTGAATCGAAGGTCATTGGTCGCAACTATTGTGACGACACTAGAAAAAGTGCTCTTTATAGGGAAGGAAACATGATATCAGGTCAGAAAGGAAGAGGAAATAACTGGGCGCTTGGTTATCATGGCTTTCACATAGAGACAGAAGAAACATCACTTTTACATCGCACTATGGATTCCTTAAGAGTAGAAGTGGAAAGATGTGATAATTATGCTGGCACCATTGTGGTTCACAGTCTGGCAGGGGGGACTGGGTCTGGACTGGGTTCACATGTGGTTGAGGCAATCAGAGATACCTACCCCCTGGGTCATGTGATGTCAGCAGCTGTGTCACCCCATGCATCTGGTGATTCTCCACTACAGCACTATAACTCACTTCTAAGTTTGGCTTCATTGCAACGTCACGCAGATGGGGTGTTGCTCTTCAACAATGATGACATTCTTCGCCATGTTTCTGTGCACAGAGGTCTAGTGTCACGGCAGAAAAATGCGGCTTCCATTTCCCTGAAAGACATGAACAGCTACATATCTGCCAGTCTTGCTGGATTGCTTCATCCTCTAGGGAACAAACCCAGACGGATGAAGGGAAATGTGAAAGATAAAGGAAACAGACAGCCATCTTACACAACTAGGTTAAAAGAGCATGGTTTGAAACACAAGATTGGAAAATCCAATAAAACAGATCCTATTTCAAGAAAACTGTCTTATTCTCATGATGAAACACCAGACAGATCCGATATTCTTGGTAGCAGCTCTTCAGAGAAGCCTTTTGCTTCATTTTCGTCTGATGAATATTCCATGAATATGTTGTCTAGTACAACTGATTTAGATACTGATGACGTAATGGCCAGGCAGCCGAGATCAACAGCATCCGCCCTGTTGCGCTATCAAGGGATTGTACGTCCTTCTACCTCAACGACCGAAAGCTGTCAATCATCATCATTAGAAACTGGAGTGTCATGTGGAAATGAACCATGGGAAATGTTACATTCAATTTGTCCTGAACCAAATAAGAAATTTGCCACACTGCATCATTTGGCCAAATCCAAAGTATCTTGGGAAGGGCTTACAAACTCACTTCTTCATTCACTCCGTCGATATGACAAACAAGGCATCCAGTTTTCCACCATCAGCTCTCTCCTTGTTGCCCGAGGAGATTTTGATGGTTCCTTTGCGCAAGAATCAGCAAGGATTGAGGAGAAGTTACGTCTTTCTCTGGGATGTGTCGGTTGGAATCCATTTCCAGTTGATTTCTGGATCATTGATTTCTGGATCAGTCGATATAATCCAGTGGGTCCAAAAGAGTCACAATCACTCACACTTTGCTTGAATTCAACCAAAATAGTGGAGACTCTGGCCGACGTCATTGAGAAGTCGCGGGCGATGTTTGACGCAGGTGCTTATTTGCATTGGTTCTGGAAACACGGCTGCTCAAAGGACGATTTCTTGGATGCATTTGACACGTTGGAGACTGTGATAGAGGATTACAAACTTGCATCGGGGTGAGGACAAACACAGGCCGCAGGAAATACTAGCAAGGCAATGGTAGAAAACATTTGCGGGAAAGGTACACGGAGGAAAGTGGATTTCTGGGTAGAAAATCCCACGACCAGAAGGTATCGATACCAGGACATTTTAAAAATAAAATTTGGAAACAACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DIM3	Tubulin delta chain OS=Xenopus tropicalis OX=8364 GN=tubd1 PE=2 SV=1
Q39582	Tubulin gamma chain OS=Chlamydomonas reinhardtii OX=3055 GN=TUBG PE=3 SV=1
Q9XFG3	Tubulin gamma chain OS=Physcomitrium patens OX=3218 GN=TUBG1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009008 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00091 all species →	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017975 all species →	Conserved_site	Tubulin, conserved site	Interproscan
IPR000217 all species →	Family	Tubulin	Interproscan
IPR003008 all species →	Domain	Tubulin/FtsZ, GTPase domain	Interproscan
IPR023123 all species →	Homologous_superfamily	Tubulin, C-terminal	Interproscan
IPR036525 all species →	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR002967 all species →	Family	Delta tubulin	Interproscan
IPR008280 all species →	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11588 all species →	TUBULIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0007017 all species →	Biological Process	microtubule-based process	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0005200 all species →	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10390	TUBD; tubulin delta	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.