Gene detail

Detailed information of amic_s0011.g31.t1 in Acropora microphthalma

Genomic Location: sc0000011_pilon:322626...327449
NR annotation: XP_029206560.1, thioredoxin-related transmembrane protein 2 homolog [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0011.g31.t1

CTACAAACTCTGGCTGATACCCCCTGAAAGCGCTCGTAAGTTGTCACGCAATATCCCCCTGTGTCTCACGATGATTGGTTCAGCGGTAATTTTGGAAGGTGACCTATCCTGCAGCTGTAATATCTCAACGCTTAGAATCAACATCCACTATAGTAAAAGACAGCTCTGGTTTCAAACGATGAAACTAGCCTCGCTGAAGCCACTGCTTAGTGCTCACTATATTCTGAATCCAGTGGCGTGCTTATTGTACGTGATCTTGAAGACTTTTCAACCATTTTGCGTTTGGCTTTTCCCCGATGATGAATGTCAAATGTCTTGGAGGGATATGGAACTCTTATCATTTCTATTCATTGTTTTGGCTGTTAAAAACAGAAAATGGAAGCCAGTGACATGGCAAGAAGTAGTCGCTATGGTATTTATGTTCAGCAAAATTGCAAATTTTGTTCTTTTTGCAAGATCTGATTTTAGGCTTGGTCTTATTTATCTCATCTTTTGCTTTGTGTTATTTTTGGTATTCCCAGAACCATCATACAGTGGTCCAGATGAAATCCAGTTTTTCAGAGGACCTGCCCTTGATGATGCTCTCTGTGCTGATCCCTCTGTAACATGGTTGGTAGAATTCTATGCTCCTTGGTGCCCACCATGCGTCAGATTTGCACCAACATTTGCAGAGTTGTCTCTGAGATATAACCACAGTCATCTCAGATTTGGAAAGCTTGATGTTGGGAAGTATCCTATAATTGCAGAAAAACATAAGGTTGATGGCTCTGCAGTGTCTAAGCAGCTCCCAACTTTAATTCTTTACGAGGGAGGAAAGGAAACTAAACGCAGGCCACTGGTGGATAGGCGAGGCGTCATTACTCCATATACTTTCACTGAGGTAAACATCGAGAGAGATTTCAACTTGCGAGATCTCAAAAAAGCAGCTGAGGAGAAAGGAAGGCTaaaagaaaacagagcaaagaaagacaaaagcaaagCGGAATGAGAGATTGATACAAAAAAAAGCTTATTTTTGTTTTGGCCAGAAAATGAAATTTTTCCAAGAGAGCACTTTGAGAATGCTTCATCATTTCGATTTTAAAGATTTGATAAATGAAAATTGCAAGAGACATAGTTATCATTTTTTGTTATAATAAGTGCTTCACGTTTAATTTGTGTTCGTTTTCTTCAAGCTTCTAATTTGTTTGTCAGATTTTGCTAAAATCGCGCAGCTGTCTCTATTATATCGAAACTTTGACACGCCTTGTTAGCACACGGATAACAAAACAGTTATTTATTAAATTATTTTTGTGGTGTTTAAGACCTCTTTACAAAAAATGTCTCGCGGTTTAAGTTTTCCTTTTGGTAGGAAACTCTTTTTCTCGCATCTTTTGTAAGTAACGTTTGATGAAAATGTACTTCCCGGCTTTTGGAGGCTATCATCATATGTTTACTTTCACGCCATCAAGTAATCAAACGAATAACAGTAAAGATGGGCTTTTTAGAGAAAATTTGGTGTCAAACGAGTCGTTGTTAAAGGTGGCTGTAATTCGTCgtttataagggttagctatccacagtgaggagatgatacagctcacattttcgagcgttagcccttccgcagagcgaatgtgaaaaacaacgttagccttccaaaAATAGATCACTTAAAGGGAATTGCAAGAATTAAGATACGACTAAAGTTAAATTCTTTGGTCGTTTTCTCAAAATTTAGCGGCAAGGCCACGATGCAGAATTTCCAAATCTCAACTCTACGTACTTTGTTCGCGTCAAATGAAAGCCCAACTTTCTAACCGTAAAGACCACTGCGCATGCCCGGTGATGAGCGAAAGCGTAAAGTACTTGCTAAGCCGTGGGCCTCCACCACGCCATTCACATTAGTATACCTTGTTGCTTCTTGTGCGTAGCGTTTCTTTATTTTATAAAAATCATAGATATGACTGCGATTATGTGGACGAAAATTATCATCCTCGCTATTGAGACTTTCCGATTTACAGAAATAAAAATTGAACTTCATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7JW12	Thioredoxin-related transmembrane protein 2 homolog OS=Drosophila melanogaster OX=7227 GN=CG11007 PE=2 SV=1
Q6IQC7	Thioredoxin-related transmembrane protein 2-B OS=Danio rerio OX=7955 GN=tmx2b PE=2 SV=1
A8WG88	Thioredoxin-related transmembrane protein 2-A OS=Danio rerio OX=7955 GN=tmx2a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007663 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR017937 all species →	Conserved_site	Thioredoxin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45663 all species →	GEO12009P1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0015035 all species →	Molecular Function	protein-disulfide reductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25112	TMX2; thioredoxin-related transmembrane protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.