Gene detail

Detailed information of amic_s0011.g55.t1 in Acropora microphthalma

Genomic Location: sc0000011_pilon:668941...674990
NR annotation: XP_015753686.1, PREDICTED: protein Wnt-10a-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0011.g55.t1

AAGCTGATGGATTTCCGATTGCTCCAAACTTAGATGGTGCGCTGATTACCTGCACACAGTAGCAAAAAGTGCAAGCCTTTGATTCGTCACTCACGGAGTCGACGGTGTGTCAGCAAAAAGTGCCGTTCATGATTTTTGCCACATTAGTGAGCCGAAGCGGCTGATGGTCCAATAGTGTCTCAGATTCATTTGGTAACGATCAGTAACAACGGTGCATACAACTTTTGTCTGCGGAGACAATCGGTTCAGCATGAACATCTCACTTGCAAAGACAATTTTGCTTTCTGTTTTAATGTTTCTGGAGTTCATATCGTGCGATACAAGATTTTCAAAGTACAAAATCGTCACCTCAAGAATCCCAGTAGAAGTGGATCCCATACTCAACGTAAACACCGTGTGCAAGAACACACCGTCGCTTCACAAGGAGCAACTTGAGCTTTGCAAAACACATGCTGATGTGGTTGCCAGTGCATTGCAAGGCGCACAGATGGCCGTTCACGAATGTCAGCGACAGCTTAGGTACTACCGTTGGAACTGCTCGGCCCTAGAGACCAAAAACAGCAATCCCTTGACAAGTCCATTGTTAGCCAGAGGATTTAGAGAGACAGCGTTTGTGTATGCCATCATCTCGGCAGGAATGGCTCAAGCCATTGCGACATCATGTAGAATGGGCAAACTGGCGAGTTGCGGATGTGACGAAACCATCATCGGTGAAGGCAGAGGATGGATTTGGGGAGGATGTAGTGACAACGCCATCTATGCCTCGAAGTTTGCAGGGCGATTTATGGATTCACGTGAAAAGAGCCGAGATATCAAATCTCAGATGAATCTACATAACAACCAGGCTGGGCGTCTGGCAATGTTAGATCTTATGAAGACCAAATGCAAGTGTAATGGAGTATCAGGCTCATGTAGTTTGAAGACATGCTGGAAGACTGTTCCTCAGTTCAGTGAAGTAGGAACAGTGCTCAAGGAGAAGTATGACTTTGCAAACTTGATGCGAGTCAGTAACAGAAACCGAAAAAACCGGAACCCGAGCAAGATTCGCCCTTCTCAAGGGAAGGCAAAGTTAATACCACGAGAGGATTTAGCGTACTACGAGTCATCACCTAGCTTTTGTAGGAAAGACCGGTCTTTGAACATCCATGGAACAGAGGGGAGAGTGTGTAAAGTAGATTCCCTGGGGAAGGACAACTGCAACTCTCTTTGCTGTGATAGAGGTTACAATATGGTGCACACAACTATAAGATCAAGATGTCGGTGCCATTTCAATTGGTGCTGCTACGTTTTGTGCAGCGAATGTGTGGAAAATGCTTGGGTAACAATATGCAAATAAACAAGACAAAGGATATGTTTTCAAGTTTTGGAATTGAGTCATACTCATGACAACACCGTTGGGAGTCCAAGAGTAACTAAGTAACTCTAAATTACTCACAAAGGATTCTAGAAGGGAATTTTCTGTATTCAGAAGTACGAGTCACGTACTTTAATGTATTATTAAAACAATAGTTATACAATTGACAACGAGGGTCAACGATCACAGAAAAGCGTTTTTCTATCACATTTTGCACTTTTGAAGAAAGAACTTTGAACTGCTCAAACGATGGTGCATCAAAGAGACTTAATAGCCGTAGTTATGTCAAATTTATGTCAATTTTTTTTATCTAAGATACATTTTTCTGGGTTAGCCAGGCCATTCTGGAATTCCGACTATTGAGATTTCATCAATTTGGTGTAGTTTTCAAGACTACCTCGATATCATAAACACAGCTGTTAAAATTAGGATGCATTCATAGTTTAGGAATTGTGCTGGCCGAGTAATGGCCTGACATAGAAATTTGCGACTGGAATTTTGACACATAGGTTCCATTAAATGTAAACGATCGAATTATTATCAATAGCTGGCTTTTGAAAGTATAACCTCCTCCGCTAAAACCCAACCAAAAATTTCCATTACCCAAATCGTAAACCTCATATTAGAACAAGAATTCCTCCTTTGAGAAAGTGAAGTCCGTTCAAATTACGTTTAAAAAACGCAATTTACAGAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P43446	Protein Wnt-10a OS=Danio rerio OX=7955 GN=wnt10a PE=1 SV=1
Q9GZT5	Protein Wnt-10a OS=Homo sapiens OX=9606 GN=WNT10A PE=1 SV=1
P70701	Protein Wnt-10a OS=Mus musculus OX=10090 GN=Wnt10a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010466 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00110 all species →	wnt	wnt family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005817 all species →	Family	Wnt	Interproscan
IPR043158 all species →	Homologous_superfamily	Wnt, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12027 all species →	WNT RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016055 all species →	Biological Process	Wnt signaling pathway	Interproscan
GO:0005109 all species →	Molecular Function	frizzled binding	Interproscan
GO:0005125 all species →	Molecular Function	cytokine activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0045165 all species →	Biological Process	cell fate commitment	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01357	WNT10; wingless-type MMTV integration site family, member 10	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.