Gene detail

Detailed information of amic_s0011.g74.t1 in Acropora microphthalma

Genomic Location: sc0000011_pilon:898190...912404
NR annotation: XP_029190285.2, uncharacterized protein LOC114957122 isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0011.g74.t1

ATGACCAAGACTCATAATGACCTTGATGCAATTTTGCAACTCTTGCAAGAGAAGGAGAAAGACTTGGAGCTTGCTGCCAGAATTGGACAATCTTTATTGGAAAGAAACAAACAGCTGTTGGTAAAAACACAGGCATTTGAGAATTTTGTGGCTGAATGTGATGAAAAGGAGACCCAACTTCAACATGAGGTGACAATGAAGAATGATCTGCTCCAAAAATTCCTAAAGGACCAGGAACTGGATGAGTTCTACCAGTTGACAAATCGGTCGGATGAGGAAAGCCGCAGGGCTGATAGAGGACCCGGAAGAAAGTCCTATCCATCGCATCCTTCAGTTTACGATTCTCGTGATTCTATTGCTCTTGAGATTGAAGAAAGTGTCAAGAGAGATCTTACCTCGCAGCAAGAAAAGAGAGAACACACAGCGCGCGTGATGAAGACAGTCCGAGCAATCAACACCGGACGATCATCCACAAGGCCGAAAAAACAAAGTGTGCATCAGCGTCAAAAAGCGAGTACCTCTAACGACGGACCAGAATCTCTTGTCAACCAATCAGATGATTTATCCGAAGAAAGTGTTGGTGCTGTGGCCGATTCTCGGCCTGGGAGTTCTGTGCAAGAACGCCGACTATCTTACGTTCGACGTCCCTTCCGAGCACCGGAGAAGTTGCAGATCGTGAAACCAATCAAAGGATCACTGACGCTTCACCAATGGAAGAAGCTCGCCAACCCAACCCTGAACCTCGCGGACGAGCGTCCTGGGGTACACGTACAGGGACAGAGTGCTGATGTCGAAGGGACAACTGAGACAGCAAGAGAACGCAAGGAATCGAGTGACTTCGATCCAGATGATCATGAATTTGAAGAAGATGAGGCTATATACATGAATATTTCACGCACTGATAGTTCCTCGGAAGCTTCAGGCGCAAAGCAGGAGAAGATTGACAATGAGAGCCTTGAAAAAGCGGCGCATTCGAAAGGGAGTGAGAAAGAAAGGAGCCTAAAAACCCCCCCTGCAAAGACCCTTCCGCAGAACTTGGGACTAATGAGTCTTGTAGGCGGGCCAGGTTTGAAAAAGGGCGTCAGAGATGGTGGGGGCATTCTGACGCACCTTCTAAATAGTCCCTCAACGTCGTCCCCTGGCAATTCTTCGGTTGGCAGGGTGCTGGCCGATGTGTTGAACAAGGCCAGCAAAGAAGCCTCGCAAAAGGAACCGTCTCGCGCTGAGTCACTTCGTAACTTAGCTAAGTACTTCAGTGAAAAAGAGCAAGGCTCTAACACTTCCTTAGACAAAGTAAAAAGTCCCCCTACCATCACATCCCAGGTCATTACAATTCCGAAGACTACCTCCCCGGGGGGTGGGACACTGTTAAGCAAAATTATCGGCTCGAGCGGAATTTCAGCGGGTATGTCAATGCCTGCGTCAATCACGACTACTGCCAAGACCGACGGTATCCCCACTACAACAAACAGCACTTCAACATCTCCTAGTATTCTTACTCGAAGTAGCCTGGTAAGGAACTCAAGCGGCAGTAACTTGTTAAGCTTGGCACAAGGAGCTATGGCAGATGATGCTTCAAAGCGTCACAGCTTGGATTCATCTCATTTGCTGAAAAATACCGCTGATACTATGGATTCGTCCCAAGGACTTGATTTTTCGCAGTTAAAATTTCCAACCCTGAGACGACGAGCCAGCAGCGGCGACCTTCAAGAAATGGCTTCAAGTTCAAGCACTTTAGATGAATTTGGCAGCACTGGCCTTGGGGCCCGGTTGTACAGGAGCTCTAGTATAGGGAACATGAAGGACCTGAGCAACGACAGCCTGTCGGGGCCATCCAAGGACGTTTCGGAAGGGGGGTTTTTTGGACGTCTTAGACGCACTCCTAGCATTGGAAGCCTGACAAACCTTGTTCAAAGGTCCAACCTTTCCGCCAGTTTTCCAAACACACTTGATGGCAGCCGACAGCGCTCCACAAGTTTAGAGTCTCTCCCAGTGTTCAAACCTGGTGAATCACCACCATCTCCTTCGAAGTTTGATAATGATAGCCCTAATTTCTTTGGACGCAAAAACGCCCCCTCGTCCAGTGTGGACACTTTGTCTGTAGCCTCGACTGGGGTCGGTTTTCCAATTGGGGCACGTTTGAGTGGCTTGTCTGGCGTCCGTGGAGCCTGGGCTCAGAGCGGAAGTAAGAGCGTGGAAATGCCAACTCCTCCTGCAGTACCACAACAGGCGCCATTGCCCAAGAGTGAGGAACGCTTGGACAAAATCAACAAGGCGTTTGCTTTTGAAGATTTTGGAGGGCTGGGTTTGATGTCCTTTTTCGGACGGAAGTCGCGGGATAATAGATAG

Transcript

amic_s0011.g74.t1

TGCGACATTTCTGCGCATGTGCAAAATATTTAAATATTACTTGTGAAATGAAGTACCTTTTTCTATCTGTTTGAGGAAATTTGTTTGTTATTTGGCCTCTAAAAACACTTTTGGCGCATAGAATCGTGTTTTAAACGTTGATGTAGGATACCATCACACAAGTTTTTGGTTTCAAGAGTTTATTTTCGTCGTTTTGTGGGTCGGAGTTTTAGCCGGTATCCGAAGGTTACGAAGAAATTTCAGACTATATGGTAACCGCCCAAGTGTTAGAGGCTTTTTTCCTGATATTTCTTGCCCCTGAAGAACAGGAAAACTGGCGGGCTTAGAAATTATCAAACGTTCATCATTCATTCAACATGGCGAAAGTTCTTGTGATGTGGAAGAACGTGAAGAGTGTTCAGCTGACGCCGCCATTACTGACGAACAAAGTCAATACTCGTGTAAATCAAATGATGAAGATATTAATTGCTGCCTTATAGAGGAAACGTTATCAAATTCTGATAATCTGGAGGTTGAAAGTGGAGTTGAAAGTGCCATAGGAGATGTTGCTGAAGGAGAATTATTGGAATTGGGAGATGAAAATTTATTAAGCTTGTATTTGGGAGACCTAGATCTTACTACAGAACAAGCTCGGGAAACCCTGAAATATTTCACATTAGCGTCTGACAGAACCAGTCAAATGACCAAGACTCATAATGACCTTGATGCAATTTTGCAACTCTTGCAAGAGAAGGAGAAAGACTTGGAGCTTGCTGCCAGAATTGGACAATCTTTATTGGAAAGAAACAAACAGCTGTTGGTAAAAACACAGGCATTTGAGAATTTTGTGGCTGAATGTGATGAAAAGGAGACCCAACTTCAACATGAGGTGACAATGAAGAATGATCTGCTCCAAAAATTCCTAAAGGACCAGGAACTGGATGAGTTCTACCAGTTGACAAATCGGTCGGATGAGGAAAGCCGCAGGGCTGATAGAGGACCCGGAAGAAAGTCCTATCCATCGCATCCTTCAGTTTACGATTCTCGTGATTCTATTGCTCTTGAGATTGAAGAAAGTGTCAAGAGAGATCTTACCTCGCAGCAAGAAAAGAGAGAACACACAGCGCGCGTGATGAAGACAGTCCGAGCAATCAACACCGGACGATCATCCACAAGGCCGAAAAAACAAAGTGTGCATCAGCGTCAAAAAGCGAGTACCTCTAACGACGGACCAGAATCTCTTGTCAACCAATCAGATGATTTATCCGAAGAAAGTGTTGGTGCTGTGGCCGATTCTCGGCCTGGGAGTTCTGTGCAAGAACGCCGACTATCTTACGTTCGACGTCCCTTCCGAGCACCGGAGAAGTTGCAGATCGTGAAACCAATCAAAGGATCACTGACGCTTCACCAATGGAAGAAGCTCGCCAACCCAACCCTGAACCTCGCGGACGAGCGTCCTGGGGTACACGTACAGGGACAGAGTGCTGATGTCGAAGGGACAACTGAGACAGCAAGAGAACGCAAGGAATCGAGTGACTTCGATCCAGATGATCATGAATTTGAAGAAGATGAGGCTATATACATGAATATTTCACGCACTGATAGTTCCTCGGAAGCTTCAGGCGCAAAGCAGGAGAAGATTGACAATGAGAGCCTTGAAAAAGCGGCGCATTCGAAAGGGAGTGAGAAAGAAAGGAGCCTAAAAACCCCCCCTGCAAAGACCCTTCCGCAGAACTTGGGACTAATGAGTCTTGTAGGCGGGCCAGGTTTGAAAAAGGGCGTCAGAGATGGTGGGGGCATTCTGACGCACCTTCTAAATAGTCCCTCAACGTCGTCCCCTGGCAATTCTTCGGTTGGCAGGGTGCTGGCCGATGTGTTGAACAAGGCCAGCAAAGAAGCCTCGCAAAAGGAACCGTCTCGCGCTGAGTCACTTCGTAACTTAGCTAAGTACTTCAGTGAAAAAGAGCAAGGCTCTAACACTTCCTTAGACAAAGTAAAAAGTCCCCCTACCATCACATCCCAGGTCATTACAATTCCGAAGACTACCTCCCCGGGGGGTGGGACACTGTTAAGCAAAATTATCGGCTCGAGCGGAATTTCAGCGGGTATGTCAATGCCTGCGTCAATCACGACTACTGCCAAGACCGACGGTATCCCCACTACAACAAACAGCACTTCAACATCTCCTAGTATTCTTACTCGAAGTAGCCTGGTAAGGAACTCAAGCGGCAGTAACTTGTTAAGCTTGGCACAAGGAGCTATGGCAGATGATGCTTCAAAGCGTCACAGCTTGGATTCATCTCATTTGCTGAAAAATACCGCTGATACTATGGATTCGTCCCAAGGACTTGATTTTTCGCAGTTAAAATTTCCAACCCTGAGACGACGAGCCAGCAGCGGCGACCTTCAAGAAATGGCTTCAAGTTCAAGCACTTTAGATGAATTTGGCAGCACTGGCCTTGGGGCCCGGTTGTACAGGAGCTCTAGTATAGGGAACATGAAGGACCTGAGCAACGACAGCCTGTCGGGGCCATCCAAGGACGTTTCGGAAGGGGGGTTTTTTGGACGTCTTAGACGCACTCCTAGCATTGGAAGCCTGACAAACCTTGTTCAAAGGTCCAACCTTTCCGCCAGTTTTCCAAACACACTTGATGGCAGCCGACAGCGCTCCACAAGTTTAGAGTCTCTCCCAGTGTTCAAACCTGGTGAATCACCACCATCTCCTTCGAAGTTTGATAATGATAGCCCTAATTTCTTTGGACGCAAAAACGCCCCCTCGTCCAGTGTGGACACTTTGTCTGTAGCCTCGACTGGGGTCGGTTTTCCAATTGGGGCACGTTTGAGTGGCTTGTCTGGCGTCCGTGGAGCCTGGGCTCAGAGCGGAAGTAAGAGCGTGGAAATGCCAACTCCTCCTGCAGTACCACAACAGGCGCCATTGCCCAAGAGTGAGGAACGCTTGGACAAAATCAACAAGGCGTTTGCTTTTGAAGATTTTGGAGGGCTGGGTTTGATGTCCTTTTTCGGACGGAAGTCGCGGGATAATAGATAGGGAAGCCACTGATATATCACTGAAATTTTATCCCGAATCATCGCATTCATGCAGAATAGAGGTGCAAGGGGACAAACTATGACATTTTTTTAGGGGGAGTAATGGGTATGACGTAAGTCGCAAACTAAAATTTCTAGGTAACACCCTCATTGGTTCTCGAGAATGCGTTTCTCAAGCCGAGGCTTAAACTAAATATCGAACATGCTTTGATTGACGAAAGATTTGCTTAAATCCAACGGTTATCGGTGTGGATTGGTCATATAAGTCGTAGTTTTGTAAGTCACGGCTTATGCACTGTATTAATTCTTGGGTGTTCGATATATTTTGGGtatgtaatatatatatatgtatatCTTGGCGATGAAAAAGAAGGGTGGGTGAATAACTTGCAAAGCAAGGTTAAAAGAGAATACATAAGCAACGGTGCGGCTTTTCAATTTCGTTAATGTGTTACAGCTTGCCGTATGACAGGTAAAAGGAAAAAAATTCAATTAGAAAACTTGTAGCAAGATTATGTAAGGACTCTATGTGAATCAGTGAAGAATTTTCGGTGTCTTAGCTTTTAATTGTTTTTACTGTTAACATTTTTATCGTTTCTTCACTGAAGAAAGGAATTTCGCGATTAGCTTGGCTTTGTTATGATTGGCTTAAAATCTCCCGCAACTTAGCCAATCAGAGCTTCGCCAGGTTCATGACTTTCTTTGTGTTACGATTGGCTTGGTCTGTCTTGTTGGTGAATTTTTTCTGAGCTCGGTAGAAAACTGTATAATCATGAACAACTACAACATGAATTTTCCATTTCTCTGCTTGTCGTAACTACTGTTTTGTTAACGTTTATGTAAAGCTTCGGTACCAGGTTACTTAGTCACCCAAAGTCCTTTGTCCTTTGTTTATGGTGGCACGTAATTATACTTTATTTTTTTTACGTTTGAAATCTGGAAATGAGATTGCTCTGTACATATGCAGAAAGCTAATAAATTCAATCTTAATTTTCAGTATTAAGCCTGCAGACGAAAAAATTGTCAAATTTCTAAAGGAAATTGATGTCATGGTGACGTTAAAAATAAAAAAGGGCTGAAATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R2H7	Trafficking kinesin-binding protein 2 OS=Rattus norvegicus OX=10116 GN=Trak2 PE=1 SV=2
O60296	Trafficking kinesin-binding protein 2 OS=Homo sapiens OX=9606 GN=TRAK2 PE=1 SV=2
Q960V3	Trafficking kinesin-binding protein milt OS=Drosophila melanogaster OX=7227 GN=milt PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003343 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04849 all species →	HAP1_N	HAP1 N-terminal conserved region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051946 all species →	Family	Intracellular Trafficking Regulator	Interproscan
IPR006933 all species →	Domain	HAP1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15751 all species →	TRAFFICKING KINESIN-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006605 all species →	Biological Process	protein targeting	Interproscan
GO:0017022 all species →	Molecular Function	myosin binding	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0047496 all species →	Biological Process	vesicle transport along microtubule	Interproscan
GO:0048311 all species →	Biological Process	mitochondrion distribution	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0011.g74.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.