Gene detail

Detailed information of amic_s0011.g76.t2 in Acropora microphthalma

Genomic Location: sc0000011_pilon:934005...944709
NR annotation: XP_029190389.1, SEC14 cytosolic factor-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0011.g76.t2

TTGCATTTGTGCGAAGCAGGGGTTTCTATTCATGAATAATTCACAAAATTATTCTAATGCTGGTCAATCATCCACGAAAAGAAGATAACGTAGTCTATAAGGCTGCCACCTGTTAACATGGATCATGAATTTTTTGGGGGATAGGTGAGTTTTCTCACCTTAGCGATAAAAGTGCAAAGCTCAGTTCACTCTCCGACAAATTCACAAGAATGAGTGGCTATGTTGGTGATTTGTCGACGTTTCAGCAGAAGTCGCTCGAGGAACTTCGAGATATGTTGACGGCCGAAACCACAACTGATGAGGCCACTTTGTTGAGGTTTCTCAGAGCTCGCAATTTTGATCCAAAGACAGCTTACAAACAATACACAGCAGCAAGAAATTGGAGAATAAATAATGACATTGATAATATCCTGAAGAAAGAGAGACCTTTGGATAAGGAATTGAAAGAGGTGATCTCCTGTGCATTTCACAAACACGACAAGCTTGGGAGACCCTGCTATATTGAACGCACAGGAAGGCAAGATACCATAGCTTTGCTGAAGCTTCCAGCAGAGCAGTACATTGCTTGGCATATTTGGAATAATGAGAAACAAATTCAGAGAATGGAAGATTTATCAAAGAAATTTGGAAGACCAATAGAGACAATGGTACACATTCACGACATGGCAGGAGCAACCATGTTACTTAGAAAGGCTGTGAATGCTTTCAAACGACTGGCAAAACTCGATCAAGATTATTACCCAGAAAGGATGGAAAAGATATTTATCATCAACACCCCCTGGGTATTTCCTATGCTTTGGAAGATTGCCAAGATTTTCTTGGATCCTAAAACACGGTCAAAATGTGTAATACTGAAAAGCTCAGAGCTGTGCAAACTTTGTGAATGTTTTAACCCCGAGGACCTCCCTGAAGAATTTGGTGGCACCTGTCACTGTGAAAATGGTTGTCTTCCTCCCATACCAAGACAAATGATGGATATGAAAGATCTGCCTCAACTGACTGAGCAAACCATCGGAGCAAAGAAGATCTTCACTCATGCAATTGAATATGATGGCAAGAAATCTGATATGTCCATTGCCTGGTATTTCAGGGCAACGAGTAAGGATTTACAGTTTGGCGTTAAATTCAAACCCAAACCTCACTCAGGTTGGCATGATAATGAGGACTACATTGGGGATGTTTGGGTTGAGGAGCTGGAACCAATTTTAGATTGTGGATCATCAATAACTGGATTTTACGCACCACCCTGCCCTGGCATTTGTACTCTGGTATGGGACAATTCAAACTGCAAATGGCTGTCAAGAACAATTAGGTACCACGTGATGGTTAGTGAAGGAGAGTCCGAAAGTGATGAGGAAATTTCAACAAATGGTATCAAAGAAACTCTGAAAAAGAGGATATAGTTAAATTTACAACTCTTCATTGAAGGGGCCAAACTAAATAATGAACTAACGTTTAGTTTGAGAAGTAATTGAATAATGTGTCATCTCAAATCTGATAAGAACCTGCTTAAGTCAATCTTAAAATCTCGCGCTGCGTTTTCAGCCAATCAGAGATCGAAGCAAAATTTCACGTCTTGCTCGTTTCCCGGCGCTCAGCATCGACAGCATGTACCGGTAAGTACTTTGCGTCGTGATTGGCTCATATGATTGCCAGCGTTTGTTTTGATTGGTCCAAGTTTGGGCTTCACAGCACGCAGTCGAACCCAGTTCAATTTAACTGCGACTCAAGCGAGATAGTATGCATTAATAAATGCGCGACGAAATTTTGTTAATTAGTTAGGGCATTGCAAAAAATGATGTCTATGTTTTTGGAGAATTACTACTACTAGGTGACAGATTATTGAGCCAAAGTTTTTCATGAATTCCAAATTTGTTGACAGGAGGTATTGAGATGCAAGGTACGTAGGTTTATGAGAAATTTTGACAAGAAGCAGACTCTAGCTTCATTCCTTGAACCAAAATTCACCAATCATAGAATATTTAAAGTTAATTAATGCTTTTATTTATCGAGTTTTTATACTGAAGACTAAATTTCTGTATTTGTGTGCTGATAAAATGGACAGTGGTATTTTAATGTTGAAGATCTTAACGAACTACACCATTTTATGGTGAAAAAATTTGTAAAACTTTTTATCCGAGCCACACTAAGCTGGCATTAAAAGATATATTTAACGGTACCTTTAGGCCGCGTTTAACAAATTCGTGTAATATTCGATTCACTTTAAATGATGCAAACATATTTTGACAAATAAAATTATAAAAAGCGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46250	SEC14 cytosolic factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=SEC14 PE=2 SV=1
Q10137	Sec14 cytosolic factor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sec14 PE=4 SV=1
F4JYJ3	Phosphatidylinositol/phosphatidylcholine transfer protein SFH11 OS=Arabidopsis thaliana OX=3702 GN=SFH11 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008609 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03765 all species →	CRAL_TRIO_N	CRAL/TRIO, N-terminal domain	Domain	Interproscan
PF00650 all species →	CRAL_TRIO	CRAL/TRIO domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001251 all species →	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR036273 all species →	Homologous_superfamily	CRAL/TRIO, N-terminal domain superfamily	Interproscan
IPR036865 all species →	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan
IPR011074 all species →	Domain	CRAL/TRIO, N-terminal domain	Interproscan
IPR051026 all species →	Family	Phosphatidylinositol/phosphatidylcholine transfer	Interproscan
IPR036598 all species →	Homologous_superfamily	GOLD domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45657 all species →	CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0011.g76.t2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26544	SEC14, SEC14L; phosphatidylinositol/phosphatidylcholine transfer protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.