Gene detail

Detailed information of amic_s0011.g78.t1 in Acropora microphthalma

Genomic Location: sc0000011_pilon:954535...962823
NR annotation: XP_029190386.2, angiopoietin-related protein 7-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0011.g78.t1

GTTAACTTTGAAAACTAGAGAGTTTATTTATAACAATTTATTAGGAATAGTTTTCTCTATAACAACAGAGAACTTATTATTCGCCGAAAATTAACTGTTTTCTGAGAATTCAATGGACGTCAACCGAACGTACGAAGGAGTGGAAATTGCAATTTTCATGAAGATTTGAGATCAGCCGAAACATGACATGTCTTAGCCAAGTTGGATTTGTGCTTGTGCCTTTCCTGGCGTCTTGCATTCGAGTACAAGGTGTTCTATATTATCCATCTATCCAATGGGACCACAGGAACACTATATTTCAAACCAATTATTCCATAAGCGTTCTTCGCAGAAGTAAACTTATAATTGTTTGCCCAAATCCCGCAACAATCCCGGTACTAGTGCGGGACAGCACGCCGATGGAGGAAATGTTCGAGAACCTTTGGATCGTTGACAAGCCTTCTTATGACGCATGTGCTGTGGATACCTCTCAACCTCAAAACAGAATAGCGATGAATTGCGATACTCCACTGGAACTAAGATACTACATAGTAGTGTTTCAACGATTTAGCGCAAATCCCGACGACTTGGAGTTTGAACCGGGAAAGAATTACTACTTCATAGCCACCTCTTCAGGCAGACATTCATCTCTGAATGAAACGTCCGGTGGAAGATGTTCAACTCACAATATGAAGATGAAAATCTACGTGTGCGTGGATTCAAATGATCCCAGATGTAGTACATCTCACATGTCAACTCCGCAACCAACCAACACTATTTCTCTGCACACAACAAATTCCCAATCAGATTCTGTTCACATTTCTCCTACGCCGGTCACACAACAGCTGCATTGCTCGGCTTCTCCCGTCAATCATTACGAACAGCTGTCATTGAGTGAAATTACAAACAACACTAACCTCATTCCTGAGATTCTAAACCACACCAGTCAGCTGACAGAGCTGTGGGCTCAGCTAAGAATCATGACGGATAAATTGGACAAGATACAAGATGAACTCGACAACTGCAGCCATGGAGCTAGGTATGGTCACTTGACAGCAGCAACACCATCTACGGCGGCTCCAATCTTGTACGCCGACTGCAAGGAGCTTTTCAACGCAGGATATCGGGTAAGCGGAGTATACGATATAAAACCACCGGGCAGTAACGAATCCTTCCCAGTCTACTGCGACCAACAGACAGCGATAAAGGGCTGGACAGTAATTCAGAAGCGCTTCAATGGTTCTGTGATCTTCAGTAACCGAACGTGGGCTGAATATCGAAATGGGTTCGGTAGTTTGACTGGTGAGTTTTGGCTCGGGCTGGATAAAATCCACATACTTACAAAGACACCAACACGGATTCGGTTTGATCTGGGAACTCCAGACGGAGTAAACAGATTTGCTGCCTATCAAGGTTTTACTATCAATGGGGAAGACGATAAGTACAGGCTGACAACTGGAAGATTCATAGCTGGAAACTGTGGCAATTCATTTTCTAGTGCGAATGGCAAACGATTCTCTACTGTGGACCAAGATAATGATAATTCTCCAAAAAGCTGTGCCCAGAAATTTAAGAGTGGTTGGTGGCATGGAAGGTGCCATCAAAGTAGTTTAAACGGTCTTTACTTCCTTGGCAGTTCCAGTGACCCCTACCACTTTGCCTCTGGCATCACGTGGTATACTTGGAAAGGATATTCTTACTCTTTGTCCAAATCAGAAATGAAAATAAGGATTTGGTAATTCAAGCAAAACTGTGATCAGAAAGCTAAAAAGGCGAAAGCTAAAAAGCTGATAGGAACGAAAACGGTTTTGCACGTTTGAAACGGCGTTTTAAAGCTCTTGGCAAATCTTCCTTTTTCTCCTTCAATCGACTGTTGGATGACTGGATATCTTATTATTGGATGAATTGACACATTAAAATTATAACTGATATGCGTTCTTGTTGCTTGTGTGTGAGGCAGCTTTTCTATCAATATGACAGCAATCACAGTCATGGTTACGAGcaggagccgatcagttagagcacgcaactcccatactaagcctatgtcacggcatttttacagactgatctatttttagtataccttttcttttctaaataaagacagttccgctccagtgacgcagtgacgtcaataagtttcttgcgattcgtcttcgcactcccacgggagtcttattccaggggaaatcgatctaaaaataaatcggtctataaaaacgccgtgacagaaatatagtggagttgcatgctccttctcataggctcctgttacgaggcaattttACGTATACGTAATGGCGAATGAAAGACTAGCCGACTTACCATGGGAAAAATTTATATGTGTCATGGCTTCGTAGTAGGAATATTTAAGATCTTTCTTTACGACTGAAAGAGGTGAATCGTCGTCTCAATTTCAATTCTACCGGCACATTTTGTTAACAGCCAACTGGGGAGCTGCCTCTTGCCCAGTAGAATAAATGTTAAAGCTTTTTACAGTTTACAACCTTGAAAAGTCATTGTTCTCTgtgcgttatagagcggttttcaaatgactgtcgaaaaaccaaaaccaaagcaattactccgaccaatcacacaacagggcccgacagcgcgatgagccaatcacaattcctagcaattacctgaaacttggtcaaggcgtgggaaaaatcacgcgtacatggcacgattggttttggttttgcttctcattggatgaaaaactggcgcgagtctttcaagccaatcattaagcgtagcaatcgcaatcacgtaattactttcgacagtcatttgaaaactgctctaacaacacaacaataatCAAAAAGAGTCAGCAAAATAAACACCGGAAAATAACACTACACTTGACAATATAATTATGTCACCTTCGTTTTAAGAGTTGCTTACAAAAGGTAATCCAATGCACGTATAACTTTTTACGATGTATACATCTGAGTGACTGTTTGCCTTGTCGTTTTACAATAAATATTCAACACACTGAGGTCATTAAAAAGTGATTTGTATCTTTCTTGCTATAGCCTGAAAAATATACTACCTCTGATCATAAATAGGTCGAATCCGAAATCATTCACAATTTACTTGAAGCGAAAATCCTACCTACCACTCATCATGTGGCCTGCCACGAGTGATTTACTATTTTCCAAAATTTTAAATTTCGTTCCATGAAACTTAGTTTGATAACAAATTTCCCAAGCCTTCTCTCCTTGCAGTTAACAGTTAGATAAAGGCTTTTTAAAACTAAAAATTTCGCACTAAAAGACCCTAAAGTTTTGAAACTATAGAAAGCATCACTTACTGATGATTTGGGGCGCGCATGAAAAAGAACTAGAATTTTATACGTTCTTGGCACAAAGGAAtagagagcttaagcaaccccgacgacgaaggcaacaaaaaccccacaaatttgcatatttgacaatgaaaaacagtatttttg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P57756	Ficolin-2 OS=Rattus norvegicus OX=10116 GN=Fcn2 PE=2 SV=1
O70497	Ficolin-2 OS=Mus musculus OX=10090 GN=Fcn2 PE=2 SV=2
O00602	Ficolin-1 OS=Homo sapiens OX=9606 GN=FCN1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000013 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF00812 all species →	Ephrin	Ephrin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR008972 all species →	Homologous_superfamily	Cupredoxin	Interproscan
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR001799 all species →	Domain	Ephrin receptor-binding domain	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0011.g78.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.