Gene detail

Detailed information of amic_s0012.g112.t2 in Acropora microphthalma

Genomic Location: sc0000012_pilon:1552277...1570818
NR annotation: XP_029181163.2, LOW QUALITY PROTEIN: thioredoxin domain-containing protein 16-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0012.g112.t2

CTTTACAAATACTAAAGAGCTATTGAGTATTGAGTTGGCCCTGGTGCGCCACCCTCAGTTGTGATTTGCATTTGCGAGCTTTTGCTCTTAGTTCTGTTTTAATATGTTATGCAATAGGATGGGTTTGGTCCGGGATGTTGTGGATTTTGGCCCGTAAGTATGCATGACTGGTACCGATGATTTCCACTTGAAAGCGGAGAGGGCAAAATTCTCTCCACCTCTACCAACGCCCTCTTTAATTTTGAACTCTCCTTTCCCTCCCTAGAATATTTTCTCTTACTCGCCCCAACCCTCAGCTCGTCTAATGGCCCAAGATGGCGGGCAGCTTTAACACCGTAGAATCCGCGTTCTCGTGCAAAAGAAGCTAGATTCAATCGAGGGTTGACATATATCTAGAGTGAAGGACCACACACTGCCATCAGTTACAATGTTCATATGTTTAAAAGAACAATGTACAGAGAAATCGACATTTTTGAATAGTACGGAAGAAGGAAATAAATCATAAAACTGTCCATTGTTTTCTCTACTGTGGTTGTGGCATTGTGTCGGATTCGCGCAAGAAAAAAAAAATCAGTTGATTTGGAGAAGTGAGGAATCACACCGTAGTTCCCACTGATGCGAACTAAAGAGTTAAAGTGGCTTGCCGCGTAATCAGCATATTTAATACGGGTCTGTTTATTATTGGACAATGAGGTGTGAGATGCCTTCAGGTGTCGATATTATAGCATGATAAAAATCATGCACGAGGCATGATAGCTCAAGGATGTACGGCTTCTTGGTTCATTGAGGAAACACTTTTCACAGTATTTTTCTTTCGTTACTAACTGACAAGGAATATGATCTACTTAAGCAGCAGATCATGGCGTTGTGGTTTGCCAGTCATGGGTTTAGTTTTAGTTTGTCTCCCGTTTCTTGTATCTGGGAGCCAAGTCCGAGACTTAACTACCAACGATCTCAGCAATATCGGAGAAATCACAAGTAAAAATTTTCTTGTGGTTTTCTTCGATAGACCAGGAACCAGAGAGTCCTATCCAAATTTCTTAAAAGAGTTCGCGAAATCGTCAGACGTTTTGGACTCACTTGATATCGAATTAGCAAAGGTTAATTGCGCCAACACAAAACAATCGCTATCTGAATGCTCAAGAGACCAGAGTGTGTTTATGTATAGGAAGGGTGATTCCAGAGTGTTTGAGAAATTTGACTTAAGCTATCTCTTTGATGTCGATTCAATAGTTGCCAATCTGCTACACATTTCTTTGGAAGAGAGGTTTTTTCATGTATCTAATGAAGAAAGTTTGAAAGAACTTATTTCTGAAGGCAGAGGAAAGAAGGATGTTGTCTTCTGTTTTGTGAAGGGACTGGGATTGAAAGAACATCGATTCTTCTTGGAGTCAGTTCACAGGTCTAAAGATGACATGCTTTTTGCCTTAACAACAAATGTAGCCATTGCAAATGAGTATGGCATTTCCTCATCAGTCTCAGCAGCGATTTTCCTTCTTCATTGCAAAGGTGTCAAGACCAGTGGAGAAAAATGCAACATCACTCATTATCACGGGAAAATTGGCCAGATTCGACTTCGTAGATTCTTCCAGGCCCAGACACTTCCTAAATATGTTTTGCTTCCTAGCAACAGAACAACAGTCTATGATTCACTGGAGCCACCCGTGAATCAAGTGTTTATATTCAGTGAAAGGATTTCTGATCTTAAAATTGAAGAACTGGAAGAGTTGGCCAAGGAATTTGAAGGCGCTGTGGGAGTTGTTCTTGTCGATATCAATGAACACATGAATCTGCTGTCCTCCTTTGGCTTATCTGAAGACAATAACTTCCCAACAGCTGCATTTGTACCAGGCAAGGCAAACAATGACAACATGACTTATGTGGACTTGTACCCAGAGAATATTGGAGCCTTCACTGAGCTAAATCTCAGACATTTTATCAAACCATTGGTGGAGAGTCCATCCAAGGAATATAAAAGATTAGCTGATGGCTCGTCACTACTTAAACTTCAGTATTCAGAGTACAGTGATATAATGAGAAGCTCAGATGGCAATTACCTATTGACCTCTGATTTTCTGCTGGTTGTGTTTTGTACTGTAGATAATGAATCTTGCAGTAATTTTTCCAAAACACTACGGCGAGTGATACGAACTTTTGACAGAACAGCAGGTGCAAGACTGTCCACTGCATTAATTTTTGTCAAGACATTAGAAGACAATGAAACTTTTAGAGGGAAACAGTTTCCTGTGATTCGGTTGCATTTAAACCGATCCAGGGATTTCATTCAATATGATGGTAAATTGGAATATGGAAATCTTGTGAGCTTCATAGCAAATTCAAACAGCATGAAGGTTCCTGTATTTTTACGTCCAAGTTTGTCTGATGAGGTACCAATTTTATTCTCTGAAGTTGATGAAGATGCAGATGCAGATGAAGATGCAGATGCGGATGCTGGAGGAAGTTCTTCTCCTTCCAATGAAGAACCTGACAGTGACTCAGTACCACCTGAAGAGACTGAAGATGACGAAGTATCTGCAACAGTACTCAACGCTAAAGTTACCTCTACGTTCAGTGATCAAGTACCTGCTCTGACAGACAAGACATTTGATGCTGTTAGAAAGGACAATGATTTGCTGGTTGTGGACTTCTTCCAGCCTTGGGACGCTCGTTGTAAAGCATTTTCACATCCGTTTGTGGAAACTGCAGCCAGTATAGGTGGTCTTGAAGTGGGAAGTTTTGCTGTTAAGCTGGCACATGTCAACTGCTTTGATTGGACAGATGTTTGTGAAAAGAATAATGTCACAGTATATCCTACAGTTAAGATGTTCCGTAAAGGATTTGATGAAATTGTTTATGATGGACCATTGGATAGTAATCATTTGACCAAAGCAGTTTTGCTGCTTCAACATAACGTTCCTTTAAGTTTGACAACCAAAGACGAAGTACAGATGTTTTTTGATGGTACTCTCCCCAAACATGCCAAGAAGGCTACTGATATTGCAGTTGTAGGCATGTTCGCAGATGAAAAATGCAAAGAATTCATGGCCTACGAAACCGCAGCTCGGTTTTTTCGCAGCAAGTTCCTTTTGGGATATGTTGCTGGTGACACAGCTGAGAGCTTATCAGCTGACTATGGCCTCAGGATTCCTTCTGTTTTGGCCTTCAAGAGAAGCGATCCCTATCAGCCATTAACAATCTTTTCAGACCCGTTTTCATCGCAGCATGTCGTTAGATTTGTTCGTCGAGCCAACATACCGTCATTTGGAGAGTTGACACCTTTTAACCTGCCATCTTACCTTGAACACAACCGACCTGTTCTTATCGTGTTTAGAGCTAGCAGTGAGGATGTCTCCATTTCACCCGTCATGAAAAAAATCGCACGTGGCAAATTGCTGCCTTCTGTCTTTCTTTGTTGGATGCCTGTTTACTCAAACAAAGATGTCAATGCAGAAATCGTACAGACATACACAGGCAGCAGTGATTCTCTTCCAGCTTTAGTTCTTGTAGATTATAGAGAGGGAAAGTTTTATCACTACAAAGGAGAGGTAACCATGCCTGCCGTTGTAAGCTGGGTGAAGAATATTCTCGAAGACAAGGAACAGTGGACAGGGTCCTTGGCTGAGACGGAATGGAAACCTCTCTTGAAGGGCTACGACTTCCTgaaaatgatagatgaagaagaggaaaaaaaggagaggaaaagaattaaacgaaaacaacttgaagaagcaacagccgctgaagacgaagaaggcgaagGTGCCTCGTCTGAGCCGACTGAACCTGAATCTAAAAAGACCGATTATCCCGTAAAGCCGAAGACCAGCAGTCGACCCCGACGACCGGAAGTGAAAGGTTCGGTTCGAGATGAACTCTGATGCTTGGGCAATCATGACACGTTATTTCACTAGATCGCGCAAGACAGCACGAAATGGTCATTGTAGAAAAGATCATTTTGACTCTAGTATGGATAGTGACTAAAAATGTTGTAAGTTCTGTGAGTCGCAAAATTGCTGTTATGAAAGTGATCGTAATTAAGAGATATTATTTATGCAATTAAAATACTTTTAAAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9T042	Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana OX=3702 GN=PDIL5-4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004544 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan
PF13848 all species →	Thioredoxin_6	Thioredoxin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR040090 all species →	Family	Thioredoxin domain-containing protein 16	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22699 all species →	THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0012.g112.t2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09580	PDIA1, P4HB; protein disulfide-isomerase A1	EC:5.3.4.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.