Genomic Location: sc0000012_pilon:1745359...1749074
NR annotation: XP_029186144.2, mitochondrial import receptor subunit TOM40 homolog [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families
| CDS |
| amic_s0012.g128.t1 |
| Transcript |
| amic_s0012.g128.t1 |
| Protein |
| amic_s0012.g128.t1 |
| UniProt accession | Description |
|---|---|
| Q6P825 | Mitochondrial import receptor subunit TOM40 homolog OS=Xenopus tropicalis OX=8364 GN=tomm40 PE=2 SV=1 |
| Q7ZTM6 | Mitochondrial import receptor subunit TOM40 homolog OS=Xenopus laevis OX=8355 GN=tomm40 PE=2 SV=1 |
| Q1LZB5 | Mitochondrial import receptor subunit TOM40 homolog OS=Bos taurus OX=9913 GN=TOMM40 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008650 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01459 all species → | Porin_3 | Eukaryotic porin | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037930 all species → | Family | Tom40 | Interproscan |
| IPR023614 all species → | Homologous_superfamily | Porin domain superfamily | Interproscan |
| IPR027246 all species → | Family | Eukaryotic porin/Tom40 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10802 all species → | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005741 all species → | Cellular Component | mitochondrial outer membrane | Interproscan |
| GO:0005742 all species → | Cellular Component | mitochondrial outer membrane translocase complex | Interproscan |
| GO:0008320 all species → | Molecular Function | protein transmembrane transporter activity | Interproscan |
| GO:0030150 all species → | Biological Process | protein import into mitochondrial matrix | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11518 | TOM40; mitochondrial import receptor subunit TOM40 | - | Transporters | ko02000 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |